Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 0.0e+00 1109.4 557 100.0
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 4.9e-286 987.3 563 89.0
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 2.5e-285 984.9 563 88.5
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.9e-283 977.6 563 88.3
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.4e-267 926.0 566 83.6
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 8.0e-260 900.2 565 81.8
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 6.3e-257 890.6 552 81.5
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 6.1e-228 794.3 560 71.8
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 6.1e-228 794.3 566 71.9
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 8.0e-228 793.9 517 75.6
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.4e-227 793.1 520 76.3
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 4.0e-227 791.6 564 72.5
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 5.2e-227 791.2 517 76.0
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 5.2e-227 791.2 560 71.6
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 1.2e-226 790.0 523 74.8
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 2.6e-226 788.9 548 74.1
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 5.8e-226 787.7 535 74.6
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 9.8e-226 786.9 559 71.2
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 8.3e-225 783.9 518 75.3
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 3.2e-224 781.9 512 75.0
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 1.2e-223 780.0 539 72.7
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 2.0e-223 779.2 541 72.8
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.0e-222 776.9 522 72.8
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 2.3e-222 775.8 518 74.5
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 5.6e-221 771.2 535 72.5
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 5.6e-221 771.2 561 70.1
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 9.5e-221 770.4 535 71.2
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.6e-220 769.6 545 71.6
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 2.1e-220 769.2 547 70.6
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 2.8e-220 768.8 548 69.5
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.8e-220 768.8 551 71.0
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.4e-219 766.5 539 70.5
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 1.4e-219 766.5 537 71.7
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 2.3e-219 765.8 535 72.1
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 2.3e-219 765.8 540 71.3
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 6.8e-219 764.2 552 71.2
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 8.9e-219 763.8 522 72.6
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 1.2e-218 763.5 559 70.1
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 4.4e-218 761.5 533 70.0
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 5.8e-218 761.1 460 80.2
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 5.8e-218 761.1 538 71.7
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 2.2e-217 759.2 525 70.9
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 1.1e-216 756.9 512 71.9
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 1.2e-215 753.4 530 70.6
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.2e-215 753.4 513 73.1
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.6e-215 753.1 524 70.4
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 1.6e-215 753.1 535 69.3
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 4.6e-215 751.5 564 68.1
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 4.6e-215 751.5 524 70.8
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.0e-214 750.4 541 68.2
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 1.0e-214 750.4 557 68.2
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 1.3e-214 750.0 519 72.6
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.7e-214 749.6 550 68.9
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 2.3e-214 749.2 511 71.2
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 3.0e-214 748.8 529 69.9
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 5.1e-214 748.0 516 72.1
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 6.6e-214 747.7 552 69.2
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 8.6e-214 747.3 542 68.3
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 1.9e-213 746.1 542 67.9
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 2.5e-213 745.7 551 69.0
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 3.3e-213 745.3 528 70.1
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 3.3e-213 745.3 521 71.6
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 4.3e-213 745.0 509 71.7
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 5.6e-213 744.6 517 72.7
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 7.3e-213 744.2 543 68.5
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 3.6e-212 741.9 509 71.9
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 3.1e-211 738.8 503 71.4
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 3.1e-211 738.8 516 71.3
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.5e-210 736.5 473 76.7
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 2.0e-210 736.1 503 72.2
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 2.6e-210 735.7 505 70.7
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 5.8e-210 734.6 521 69.1
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 7.6e-210 734.2 533 68.9
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 7.6e-210 734.2 518 72.4
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 9.9e-210 733.8 506 70.9
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 9.9e-210 733.8 502 71.5
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 9.9e-210 733.8 517 72.3
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 1.3e-209 733.4 479 75.8
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.7e-209 733.0 505 70.5
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.1e-208 730.3 565 67.1
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 1.1e-208 730.3 476 74.6
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 4.6e-207 724.9 539 68.6
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 6.6e-206 721.1 502 71.1
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 1.2e-204 716.8 549 66.1
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.5e-202 709.9 565 65.7
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 4.4e-202 708.4 502 70.5
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 9.9e-202 707.2 472 74.8
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.7e-201 706.4 424 77.8
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 8.4e-201 704.1 463 72.6
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 8.4e-201 704.1 601 61.7
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 1.1e-200 703.7 456 73.7
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 2.4e-200 702.6 493 70.8
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 3.2e-200 702.2 555 65.2
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 5.4e-200 701.4 512 69.3
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 3.0e-198 695.7 453 73.7
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.9e-197 693.0 553 66.7
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 1.0e-182 644.0 518 65.6
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 4.9e-177 625.2 419 73.3
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 9.3e-176 620.9 375 80.0
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 3.9e-174 615.5 512 60.2
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.7e-161 573.5 386 75.4
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 3.7e-156 555.8 512 55.7
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 2.9e-153 546.2 456 58.3
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 5.1e-150 535.4 402 68.9
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 5.3e-147 525.4 385 69.9
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 6.5e-145 518.5 438 57.5
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 9.8e-133 478.0 454 52.4
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 1.4e-131 474.2 566 51.4
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.2e-128 463.0 558 50.4
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.8e-124 449.9 573 50.6
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 4.1e-123 446.0 561 48.5
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 7.7e-122 441.8 536 51.3
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.0e-118 431.4 492 47.0
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.6e-117 426.8 534 50.7
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 1.4e-115 421.0 452 53.3
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 3.1e-110 403.3 551 43.4
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.1e-102 378.3 255 72.9
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.2e-101 374.8 477 43.8
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.1e-80 305.1 177 82.5
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 3.1e-78 297.0 481 38.7
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 8.1e-71 272.3 169 75.7
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 9.3e-51 205.7 216 56.9
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 9.1e-46 189.1 162 62.3
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 7.2e-43 179.5 129 75.2
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 5.7e-40 169.9 129 71.3
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.4e-38 165.2 139 61.2
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.8e-33 148.3 131 58.0
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.4e-30 138.7 85 75.3
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 7.7e-29 132.9 105 61.9
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 5.7e-24 116.7 125 44.8
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 5.5e-19 100.1 104 53.8
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.7e-16 90.1 58 72.4
Sopen04g004520 Solanum pennellii HOM05D001773 ORTHO05D001710 3.0e-09 67.8 60 61.7
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 2.0e-08 65.1 143 39.9
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 7.5e-08 63.2 130 40.0
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 7.5e-08 63.2 137 35.8
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 2.2e-07 61.6 38 76.3
Sopen01g006830 Solanum pennellii HOM05D001773 ORTHO05D001710 3.1e-06 57.8 37 73.0


User provided reference genes

Program Settings