Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 5.9e-258 893.6 441 100.0
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 4.1e-227 791.2 441 88.2
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 5.4e-227 790.8 441 88.2
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 2.0e-226 788.9 441 88.4
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 1.2e-213 746.5 441 83.7
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.6e-210 736.1 453 82.3
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 2.9e-172 609.0 443 69.5
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 3.5e-170 602.1 445 70.1
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 2.4e-166 589.3 446 67.7
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 1.7e-164 583.2 446 67.7
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 1.0e-161 573.9 446 67.7
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 2.0e-160 569.7 449 66.8
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 5.7e-160 568.2 450 66.4
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 1.3e-159 567.0 484 62.2
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 1.7e-159 566.6 447 64.4
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 1.7e-159 566.6 448 65.0
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 2.2e-159 566.2 448 66.3
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 4.1e-158 562.0 443 67.7
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 2.6e-157 559.3 464 63.1
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 1.3e-156 557.0 448 64.5
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 1.4e-155 553.5 447 63.5
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.2e-155 552.4 446 64.1
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 9.4e-155 550.8 452 64.6
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 2.3e-153 546.2 449 63.7
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 3.9e-153 545.4 448 63.2
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 3.9e-153 545.4 347 79.8
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 8.8e-153 544.3 448 63.8
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 3.3e-152 542.3 445 62.5
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 5.7e-152 541.6 448 63.6
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 7.4e-152 541.2 445 62.7
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 2.2e-151 539.7 448 64.3
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 2.8e-151 539.3 448 62.3
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 3.1e-150 535.8 446 63.0
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 3.1e-150 535.8 447 64.2
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 7.0e-150 534.6 447 63.5
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 7.0e-150 534.6 471 59.4
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 1.2e-149 533.9 454 62.8
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.5e-149 532.3 447 62.9
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 4.5e-149 531.9 446 64.1
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 7.7e-149 531.2 451 62.7
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 1.0e-148 530.8 448 61.2
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.3e-148 530.4 450 64.2
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 1.7e-148 530.0 450 62.4
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 2.2e-148 529.6 452 62.6
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 2.2e-148 529.6 448 62.7
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 7.2e-147 524.6 343 76.4
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 8.0e-146 521.2 411 66.2
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 2.3e-145 519.6 455 60.2
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 5.2e-145 518.5 444 59.9
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 2.0e-144 516.5 444 61.9
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 7.4e-144 514.6 449 61.5
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 9.7e-144 514.2 427 63.7
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 1.3e-143 513.8 439 62.0
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 1.7e-143 513.5 439 61.7
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 6.3e-143 511.5 454 59.9
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 1.1e-142 510.8 448 58.7
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 3.1e-142 509.2 446 60.1
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 5.3e-142 508.4 448 61.4
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 1.6e-141 506.9 445 60.4
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.6e-141 506.1 339 74.9
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 5.9e-141 505.0 446 61.7
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 3.8e-140 502.3 450 60.2
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.9e-139 500.0 445 59.1
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 2.5e-139 499.6 450 60.4
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 1.2e-138 497.3 469 58.8
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 1.2e-138 497.3 339 73.7
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 3.6e-138 495.7 442 58.6
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 6.1e-138 495.0 385 66.0
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 4.0e-137 492.3 382 66.2
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 1.2e-136 490.7 457 57.5
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 2.6e-136 489.6 406 64.0
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 3.4e-136 489.2 441 57.6
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 5.7e-136 488.4 442 57.0
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 9.7e-136 487.6 449 58.6
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 6.3e-135 485.0 408 62.0
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 8.3e-135 484.6 449 56.1
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 1.8e-134 483.4 442 56.8
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 4.1e-134 482.3 443 57.1
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 4.1e-134 482.3 461 58.4
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 1.2e-133 480.7 445 58.7
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 5.9e-133 478.4 442 56.3
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 2.9e-132 476.1 472 57.4
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 8.5e-132 474.6 342 69.9
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 8.0e-130 468.0 467 54.4
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 3.0e-129 466.1 458 54.8
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 4.0e-129 465.7 333 70.6
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 7.0e-126 454.9 495 51.3
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 4.2e-123 445.7 452 54.0
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 2.1e-122 443.4 454 53.5
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 2.8e-122 443.0 399 61.2
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.5e-120 437.2 379 59.6
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 4.1e-118 429.1 298 71.8
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 9.2e-118 427.9 460 52.4
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.1e-115 421.0 343 64.7
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 1.2e-112 411.0 368 60.1
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 4.4e-112 409.1 481 47.6
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 5.8e-112 408.7 255 76.5
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 5.0e-108 395.6 368 58.7
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 4.4e-104 382.5 395 54.9
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 5.8e-104 382.1 452 48.7
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.3e-103 380.9 255 69.4
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.1e-102 375.9 253 71.5
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 6.6e-100 368.6 379 52.5
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 3.3e-99 366.3 346 54.3
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 2.9e-95 353.2 354 53.4
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.1e-94 351.3 296 59.8
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 3.5e-93 346.3 359 49.3
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 7.8e-93 345.1 446 44.4
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.2e-90 337.8 292 61.3
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 2.8e-90 336.7 353 48.7
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 7.6e-88 328.6 295 60.3
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 5.4e-86 322.4 253 62.1
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 5.8e-80 302.4 486 39.9
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 1.9e-75 287.3 334 47.6
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.9e-63 246.9 442 38.5
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.2e-55 220.7 216 60.2
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.7e-53 213.8 437 35.5
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 5.9e-48 196.1 234 49.1
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 1.6e-45 188.0 161 57.1
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.8e-44 184.5 260 41.2
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 3.8e-39 166.8 248 41.9
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 4.1e-33 146.7 352 31.2
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 7.0e-33 146.0 93 73.1
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 7.0e-33 146.0 194 49.5
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 3.8e-31 140.2 122 57.4
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 7.7e-24 115.9 134 49.3
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.9e-23 114.0 60 81.7
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.5e-22 111.7 187 40.1
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 2.7e-21 107.5 201 35.3
PGSC0003DMG401006600 Solanum tuberosum HOM05D032728 ORTHO05D007283 8.0e-21 105.9 55 85.5
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 1.0e-20 105.5 132 53.0
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.8e-20 104.8 125 44.8
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 4.5e-16 90.1 73 65.8
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 5.6e-06 56.6 79 46.8


User provided reference genes

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