Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p75850 Brassica napus HOM05D003113 ORTHO05D003598 1.3e-33 145.6 65 100.0
BolC5t35072H Brassica oleracea HOM05D003113 ORTHO05D003598 8.7e-33 142.9 65 96.9
BcaC05g30515 Brassica carinata HOM05D003113 ORTHO05D003598 2.5e-32 141.4 65 95.4
A05p44390 Brassica napus HOM05D003113 ORTHO05D003598 2.5e-32 141.4 65 95.4
C09p75840 Brassica napus HOM05D003113 ORTHO05D003598 5.6e-32 140.2 65 93.8
Aa31LG5G13190 Aethionema arabicum HOM05D003113 ORTHO05D003598 9.6e-32 139.4 65 92.3
AL3G12120 Arabidopsis lyrata HOM05D003113 ORTHO05D003598 9.6e-32 139.4 65 92.3
Carub.0003s0182 Capsella rubella HOM05D003113 ORTHO05D003598 9.6e-32 139.4 65 92.3
CARHR076720 Cardamine hirsuta HOM05D003113 ORTHO05D003598 9.6e-32 139.4 65 92.3
Thhalv10021062m.g Eutrema salsugineum HOM05D003113 ORTHO05D003598 9.6e-32 139.4 65 92.3
Sp3g01750 Schrenkiella parvula HOM05D003113 ORTHO05D003598 2.8e-31 137.9 65 90.8
AT3G02720 Arabidopsis thaliana HOM05D003113 ORTHO05D003598 1.1e-30 136.0 65 90.8
Zm00001eb066660 Zea mays HOM05D003113 ORTHO05D003598 1.1e-30 136.0 65 89.2
THA.LOC104802426 Tarenaya hassleriana HOM05D003113 ORTHO05D003598 1.4e-30 135.6 64 89.1
HPP92_025843 Vanilla planifolia HOM05D003113 ORTHO05D003598 6.9e-30 133.3 65 86.2
Hma1.2p1_2393F.1_g321250 Hydrangea macrophylla HOM05D003113 ORTHO05D003598 1.2e-29 132.5 65 86.2
CANSAT54G1103 Cannabis sativa HOM05D003113 ORTHO05D003598 2.0e-29 131.7 65 86.2
Atru.chr6.1235 Acer truncatum HOM05D003113 ORTHO05D003598 2.6e-29 131.3 65 84.6
CDE04G1699 Ceratophyllum demersum HOM05D003113 ORTHO05D003598 2.6e-29 131.3 65 83.1
MD09G1281600 Malus domestica HOM05D003113 ORTHO05D003598 2.6e-29 131.3 65 87.7
Os04g0671700 Oryza sativa ssp. japonica HOM05D003113 ORTHO05D003598 2.6e-29 131.3 65 86.2
AUR62004752 Chenopodium quinoa HOM05D003113 ORTHO05D003598 3.4e-29 131.0 65 84.6
Ca_15114_v3 Cicer arietinum L. HOM05D003113 ORTHO05D003598 3.4e-29 131.0 65 86.2
MD09G1281500 Malus domestica HOM05D003113 ORTHO05D003598 3.4e-29 131.0 65 86.2
TAR629G1893 Trochodendron aralioides HOM05D003113 ORTHO05D003598 5.8e-29 130.2 65 86.2
Cfa007734 Carpinus fangiana HOM05D003113 ORTHO05D003598 7.6e-29 129.8 65 86.2
Haze_14340 Corylus avellana HOM05D003113 ORTHO05D003598 7.6e-29 129.8 65 86.2
Haze_14342 Corylus avellana HOM05D003113 ORTHO05D003598 7.6e-29 129.8 65 86.2
Migut.K00982 Erythranthe guttata HOM05D003113 ORTHO05D003598 7.6e-29 129.8 65 83.1
Medtr3g064140 Medicago truncatula HOM05D003113 ORTHO05D003598 7.6e-29 129.8 65 84.6
Psat5g143120 Pisum sativum HOM05D003113 ORTHO05D003598 7.6e-29 129.8 65 84.6
Lj6g0000809 Lotus japonicus HOM05D003113 ORTHO05D003598 9.9e-29 129.4 65 84.6
Phvul.006G085000 Phaseolus vulgaris HOM05D003113 ORTHO05D003598 9.9e-29 129.4 65 84.6
Thecc.04G055500 Theobroma cacao HOM05D003113 ORTHO05D003598 9.9e-29 129.4 65 83.1
VMungo0540G1612 Vigna mungo HOM05D003113 ORTHO05D003598 9.9e-29 129.4 65 84.6
CSS0001037 Camellia sinensis var. sinensis HOM05D003113 ORTHO05D003598 1.7e-28 128.6 65 84.6
AUR62037502 Chenopodium quinoa HOM05D003113 ORTHO05D003598 1.7e-28 128.6 65 83.1
Dinv19091 Davidia involucrata HOM05D003113 ORTHO05D003598 1.7e-28 128.6 65 84.6
FvH4_1g27590 Fragaria vesca HOM05D003113 ORTHO05D003598 1.7e-28 128.6 65 84.6
FAN01G0422 Fragaria x ananassa HOM05D003113 ORTHO05D003598 1.7e-28 128.6 65 84.6
FAN06G1296 Fragaria x ananassa HOM05D003113 ORTHO05D003598 1.7e-28 128.6 65 84.6
FAN26G1466 Fragaria x ananassa HOM05D003113 ORTHO05D003598 1.7e-28 128.6 65 84.6
CiPaw.03G079900 Carya illinoinensis HOM05D003113 ORTHO05D003598 2.2e-28 128.3 65 84.6
Haze_14348 Corylus avellana HOM05D003113 ORTHO05D003598 2.2e-28 128.3 65 84.6
Glyma.18G045900 Glycine max HOM05D003113 ORTHO05D003598 2.2e-28 128.3 65 83.1
CAN.G809.97 Capsicum annuum HOM05D003113 ORTHO05D003598 2.9e-28 127.9 65 83.1
Cfa007732 Carpinus fangiana HOM05D003113 ORTHO05D003598 2.9e-28 127.9 65 84.6
Potri.017G143940 Populus trichocarpa HOM05D003113 ORTHO05D003598 2.9e-28 127.9 65 84.6
SalBow5G2515 Salvia bowleyana HOM05D003113 ORTHO05D003598 2.9e-28 127.9 65 83.1
Lalb_Chr15g0085371 Lupinus albus HOM05D003113 ORTHO05D003598 3.8e-28 127.5 65 81.5
Sabra17G0120200 Salix brachista HOM05D003113 ORTHO05D003598 3.8e-28 127.5 65 84.6
SGA_v2.0_scaffold115G32033 Striga asiatica HOM05D003113 ORTHO05D003598 3.8e-28 127.5 65 81.5
Eucgr.F02918 Eucalyptus grandis HOM05D003113 ORTHO05D003598 4.9e-28 127.1 65 81.5
FAN28G2527 Fragaria x ananassa HOM05D003113 ORTHO05D003598 4.9e-28 127.1 65 83.1
Actinidia40402 Actinidia chinensis HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 83.1
Aqoxy3G04195 Aquilegia oxysepala HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 83.1
CiPaw.03G080000 Carya illinoinensis HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 83.1
CsaV3_4G000590 Cucumis sativus L. HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 81.5
FvH4_7g05680 Fragaria vesca HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 84.6
Potri.004G075900 Populus trichocarpa HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 83.1
Potri.004G076000 Populus trichocarpa HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 83.1
Potri.004G076200 Populus trichocarpa HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 83.1
Potri.017G143880 Populus trichocarpa HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 83.1
RcHm_v2.0_Chr3g0487941 Rosa chinensis HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 83.1
RcHm_v2.0_Chr3g0487981 Rosa chinensis HOM05D003113 ORTHO05D003598 6.4e-28 126.7 65 83.1
Lsat_1_v5_gn_4_136981 Lactuca sativa HOM05D003113 ORTHO05D003598 8.4e-28 126.3 65 83.1
Peaxi162Scf00344g00202 Petunia axillaris HOM05D003113 ORTHO05D003598 8.4e-28 126.3 65 81.5
Cpa.g.sc1042.1 Carica papaya HOM05D003113 ORTHO05D003598 1.1e-27 125.9 64 82.8
PSO063G5015 Papaver somniferum HOM05D003113 ORTHO05D003598 1.1e-27 125.9 65 81.5
PSO782G1600 Papaver somniferum HOM05D003113 ORTHO05D003598 1.1e-27 125.9 65 81.5
GSVIVG01035277001 Vitis vinifera HOM05D003113 ORTHO05D003598 1.1e-27 125.9 65 81.5
ClCG10G010720 Citrullus lanatus HOM05D003113 ORTHO05D003598 1.4e-27 125.6 65 81.5
MBI03_g47434_MAGBIO Magnolia biondii HOM05D003113 ORTHO05D003598 1.4e-27 125.6 65 80.0
Nitab4.5_0003412g0010 Nicotiana tabacum HOM05D003113 ORTHO05D003598 1.4e-27 125.6 65 81.5
PGSC0003DMG400019717 Solanum tuberosum HOM05D003113 ORTHO05D003598 1.4e-27 125.6 65 80.0
unitig_748.g7019 Utricularia gibba HOM05D003113 ORTHO05D003598 1.4e-27 125.6 64 79.7
Atru.chr1.1982 Acer truncatum HOM05D003113 ORTHO05D003598 1.9e-27 125.2 65 81.5
ATR0618G319 Amborella trichopoda HOM05D003113 ORTHO05D003598 1.9e-27 125.2 65 78.5
Cpa.g.c35570.1 Carica papaya HOM05D003113 ORTHO05D003598 1.9e-27 125.2 63 84.1
Lj4A250T92 Lonicera japonica HOM05D003113 ORTHO05D003598 1.9e-27 125.2 65 80.0
MELO3C017976.2 Cucumis melo HOM05D003113 ORTHO05D003598 2.4e-27 124.8 63 84.1
Duzib138G0872 Durio zibethinus HOM05D003113 ORTHO05D003598 2.4e-27 124.8 65 81.5
FAN10G1472 Fragaria x ananassa HOM05D003113 ORTHO05D003598 2.4e-27 124.8 64 84.4
Oeu018190.1 Olea europaea HOM05D003113 ORTHO05D003598 2.4e-27 124.8 65 80.0
QL06p023771 Quercus lobata HOM05D003113 ORTHO05D003598 2.4e-27 124.8 62 87.1
Sed0026521 Sechium edule HOM05D003113 ORTHO05D003598 2.4e-27 124.8 65 80.0
Hund22217 Selenicereus undatus HOM05D003113 ORTHO05D003598 2.4e-27 124.8 65 78.5
Nitab4.5_0000483g0120 Nicotiana tabacum HOM05D003113 ORTHO05D003598 3.2e-27 124.4 65 78.5
Rhsim10G0186400 Rhododendron simsii HOM05D003113 ORTHO05D003598 3.2e-27 124.4 65 81.5
Sabra04G0050700 Salix brachista HOM05D003113 ORTHO05D006811 3.2e-27 124.4 65 83.1
Ciclev10011868m.g Citrus clementina HOM05D003113 ORTHO05D003598 4.2e-27 124.0 65 78.5
Manes.01G124600 Manihot esculenta HOM05D003113 ORTHO05D003598 4.2e-27 124.0 65 78.5
EL10Ac4g08907 Beta vulgaris HOM05D003113 ORTHO05D003598 5.5e-27 123.6 63 84.1
Nn4g24841 Nelumbo nucifera HOM05D003113 ORTHO05D003598 5.5e-27 123.6 65 80.0
Rhsim10G0186500 Rhododendron simsii HOM05D003113 ORTHO05D003598 5.5e-27 123.6 65 81.5
Solyc02g081400.3 Solanum lycopersicum HOM05D003113 ORTHO05D003598 5.5e-27 123.6 65 78.5
Sopen02g026030 Solanum pennellii HOM05D003113 ORTHO05D003598 5.5e-27 123.6 65 78.5
MSTRG.15623 Avicennia marina HOM05D003113 ORTHO05D003598 7.1e-27 123.2 65 80.0
LjContig00141g0026358 Lotus japonicus HOM05D003113 ORTHO05D003598 7.1e-27 123.2 62 83.9
PGR004G2537 Punica granatum HOM05D003113 ORTHO05D003598 7.1e-27 123.2 65 81.5
Sc06g0003030 Simmondsia chinensis HOM05D003113 ORTHO05D003598 7.1e-27 123.2 65 80.0
Cc07_g12660 Coffea canephora HOM05D003113 ORTHO05D003598 9.3e-27 122.9 65 78.5
Eucgr.J00709 Eucalyptus grandis HOM05D003113 ORTHO05D003598 9.3e-27 122.9 65 78.5
Gohir.A07G074500 Gossypium hirsutum HOM05D003113 ORTHO05D003598 9.3e-27 122.9 65 80.0
Gohir.D07G079200 Gossypium hirsutum HOM05D003113 ORTHO05D003598 9.3e-27 122.9 65 80.0
vmacro20450 Vaccinium macrocarpon HOM05D003113 ORTHO05D003598 9.3e-27 122.9 64 81.2
ECA232G3588 Erigeron canadensis HOM05D003113 ORTHO05D003598 1.2e-26 122.5 61 80.3
arahy.Tifrunner.gnm1.ann1.T4H5CG Arachis hypogaea HOM05D003113 ORTHO05D003598 1.6e-26 122.1 65 76.9
arahy.Tifrunner.gnm1.ann1.W5NPNE Arachis hypogaea HOM05D003113 ORTHO05D003598 1.6e-26 122.1 65 76.9
HanXRQChr15g0493441 Helianthus annuus HOM05D003113 ORTHO05D003598 1.6e-26 122.1 65 78.5
Eucgr.E00619 Eucalyptus grandis HOM05D003113 ORTHO05D003598 2.1e-26 121.7 65 76.9
Ah.04g162920 Amaranthus hybridus HOM05D003113 ORTHO05D003598 4.6e-26 120.6 63 79.4
ClCG10G010710 Citrullus lanatus HOM05D003113 ORTHO05D003598 4.6e-26 120.6 65 78.5
TWI74G0554 Tripterygium wilfordii HOM05D003113 ORTHO05D003598 4.6e-26 120.6 65 78.5
Gorai.001G083800 Gossypium raimondii HOM05D003113 ORTHO05D003598 7.9e-26 119.8 63 81.0
Atru.chr6.1236 Acer truncatum HOM05D003113 ORTHO05D003598 1.0e-25 119.4 65 76.9
Eucgr.C03234 Eucalyptus grandis HOM05D003113 ORTHO05D003598 1.3e-25 119.0 65 75.4
Eucgr.K00255 Eucalyptus grandis HOM05D003113 ORTHO05D003598 2.3e-25 118.2 65 76.9
Eucgr.D02003 Eucalyptus grandis HOM05D004599 ORTHO05D005564 3.0e-25 117.9 60 80.0
Glyma.18G046000 Glycine max HOM05D003113 ORTHO05D003598 6.7e-25 116.7 65 76.9
Oeu002680.1 Olea europaea HOM05D003113 ORTHO05D003598 6.7e-25 116.7 63 74.6
SEGI_12307 Sequoiadendron giganteum HOM05D003113 ORTHO05D003598 4.3e-24 114.0 65 70.8
Eucgr.H01637 Eucalyptus grandis HOM05D003113 ORTHO05D003598 7.4e-24 113.2 61 77.0
Pp3c10_15130 Physcomitrium patens HOM05D003113 ORTHO05D003598 7.4e-24 113.2 65 72.3
AagrBONN_evm.TU.Sc2ySwM_362.503 Anthoceros agrestis HOM05D003113 ORTHO05D003598 1.3e-23 112.5 65 73.8
Mapoly0027s0097 Marchantia polymorpha HOM05D003113 ORTHO05D003598 2.1e-23 111.7 65 72.3
SEGI_37003 Sequoiadendron giganteum HOM05D003113 ORTHO05D003598 2.1e-23 111.7 65 67.7
Lsat_1_v5_gn_4_137160 Lactuca sativa HOM05D003113 ORTHO05D003598 1.8e-22 108.6 61 68.9
Cpa.g.sc2658.2 Carica papaya HOM05D003113 ORTHO05D003598 6.9e-22 106.7 64 67.2
Sc03g0004930 Simmondsia chinensis HOM05D003113 ORTHO05D003598 6.9e-22 106.7 65 67.7
CBR_g29737 Chara braunii HOM05D003113 ORTHO05D003598 2.0e-21 105.1 64 68.8
arahy.Tifrunner.gnm1.ann1.MLE48V Arachis hypogaea HOM05D003113 ORTHO05D003598 2.2e-20 101.7 63 66.7
Prupe.3G012200 Prunus persica HOM05D003113 ORTHO05D003598 8.4e-20 99.8 65 66.2
Prupe.3G012400 Prunus persica HOM05D003113 ORTHO05D003598 2.5e-19 98.2 65 64.6
Prupe.3G012800 Prunus persica HOM05D003113 ORTHO05D003598 2.5e-19 98.2 65 64.6
Prupe.3G012900 Prunus persica HOM05D003113 ORTHO05D003598 2.5e-19 98.2 65 64.6
RcHm_v2.0_Chr3g0487821 Rosa chinensis HOM05D003113 ORTHO05D003598 3.2e-19 97.8 65 64.6
Lsat_1_v5_gn_4_137221 Lactuca sativa HOM05D003113 ORTHO05D003598 4.2e-19 97.4 61 59.0
RcHm_v2.0_Chr3g0487831 Rosa chinensis HOM05D003113 ORTHO05D003598 4.2e-19 97.4 65 64.6
PSO478G0679 Papaver somniferum HOM05D003113 ORTHO05D003598 5.5e-19 97.1 63 58.7
Prupe.3G012600 Prunus persica HOM05D003113 ORTHO05D003598 5.5e-19 97.1 65 64.6
EL10Ac4g08908 Beta vulgaris HOM05D003113 ORTHO05D003598 7.1e-19 96.7 64 60.9
RcHm_v2.0_Chr3g0487891 Rosa chinensis HOM05D003113 ORTHO05D003598 7.1e-19 96.7 65 63.1
SMO144G0171 Selaginella moellendorffii HOM05D003113 ORTHO05D003598 1.2e-18 95.9 64 62.5
PSO675G5128 Papaver somniferum HOM05D003113 ORTHO05D003598 2.7e-18 94.7 65 58.5
Cpa.g.sc1042.3 Carica papaya HOM05D003113 ORTHO05D003598 5.7e-16 87.0 60 56.7
MBI11_g33856_MAGBIO Magnolia biondii HOM05D003113 ORTHO05D003598 1.1e-14 82.8 63 49.2
Aqoxy5G00372 Aquilegia oxysepala HOM05D003113 ORTHO05D003598 5.3e-14 80.5 63 44.4
PSO210G3841 Papaver somniferum HOM05D003113 ORTHO05D003598 9.0e-14 79.7 63 46.0
PSO832G0966 Papaver somniferum HOM05D003113 ORTHO05D003598 2.0e-13 78.6 63 44.4
MBI03_g37598_MAGBIO Magnolia biondii HOM05D003113 ORTHO05D003598 2.6e-13 78.2 63 47.6
Actinidia17153 Actinidia chinensis HOM05D003113 ORTHO05D003598 7.6e-13 76.6 59 52.5
Prupe.3G022000 Prunus persica HOM05D003113 ORTHO05D003598 8.4e-12 73.2 63 42.9
Os11g0591550 Oryza sativa ssp. japonica HOM05D003113 ORTHO05D003598 2.5e-11 71.6 63 41.3
Prupe.3G012300 Prunus persica HOM05D003113 ORTHO05D003598 4.2e-11 70.9 49 59.2
arahy.Tifrunner.gnm1.ann1.3U7LNL Arachis hypogaea HOM05D003113 ORTHO05D003598 7.2e-11 70.1 60 45.0
Cpa.g.sc2658.1 Carica papaya HOM05D003113 ORTHO05D003598 7.2e-11 70.1 52 48.1
COL.COLO4_13432 Corchorus olitorius HOM05D000112 ORTHO05D001327 1.6e-10 68.9 63 39.7
Manes.01G202500 Manihot esculenta HOM05D003113 ORTHO05D003598 1.0e-09 66.2 69 40.6
vmacro20449 Vaccinium macrocarpon HOM05D003113 ORTHO05D003598 3.0e-09 64.7 54 44.4
Atru.chr5.1553 Acer truncatum HOM05D003113 ORTHO05D003598 3.3e-08 61.2 68 35.3
CSS0046671 Camellia sinensis var. sinensis HOM05D003113 ORTHO05D003598 5.7e-08 60.5 64 46.9
arahy.Tifrunner.gnm1.ann1.BWH72M Arachis hypogaea HOM05D003113 ORTHO05D003598 1.3e-07 59.3 58 39.7
Manes.01G202400 Manihot esculenta HOM05D003113 ORTHO05D003598 3.7e-07 57.8 69 37.7
TWI12G0667 Tripterygium wilfordii HOM05D003113 ORTHO05D003598 4.8e-07 57.4 69 36.2
Ah.06g191490 Amaranthus hybridus HOM05D003113 ORTHO05D003598 6.3e-07 57.0 58 37.9
COL.COLO4_06091 Corchorus olitorius HOM05D003113 ORTHO05D003598 8.2e-07 56.6 67 34.3
Gohir.D11G132100 Gossypium hirsutum HOM05D003113 ORTHO05D003598 8.2e-07 56.6 64 37.5
Gohir.A11G126600 Gossypium hirsutum HOM05D003113 ORTHO05D003598 1.1e-06 56.2 64 37.5
THA.LOC104824175 Tarenaya hassleriana HOM05D003113 ORTHO05D003598 3.1e-06 54.7 67 35.8
Thecc.01G268700 Theobroma cacao HOM05D003113 ORTHO05D003598 4.1e-06 54.3 64 35.9


User provided reference genes

Program Settings