Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 9.8e-297 1022.7 514 100.0
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.2e-294 1015.8 514 99.6
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.3e-293 1012.3 514 99.2
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.1e-290 1001.1 506 99.2
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 5.8e-289 996.9 506 99.2
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 2.2e-288 995.0 506 98.6
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 5.4e-271 937.2 506 94.3
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 9.6e-260 899.8 508 90.4
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 2.4e-258 895.2 508 89.4
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 2.3e-253 878.6 460 95.4
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 6.7e-253 877.1 508 88.0
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.5e-236 822.8 512 82.6
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 4.1e-234 814.7 516 79.7
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 4.5e-233 811.2 506 84.2
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.4e-223 779.6 444 89.0
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 3.4e-204 715.3 507 69.8
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.7e-203 713.0 509 70.1
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.6e-201 706.4 509 68.4
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.9e-199 699.5 508 67.5
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.0e-197 693.7 515 67.8
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.0e-197 692.2 473 71.7
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.7e-196 688.0 473 70.8
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.1e-194 683.7 511 67.9
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.8e-194 682.9 507 68.4
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.6e-193 679.9 509 67.0
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 5.9e-193 677.9 511 66.5
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 5.9e-193 677.9 511 67.5
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 5.9e-193 677.9 511 66.1
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.0e-192 677.2 516 66.5
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 1.7e-192 676.4 514 66.9
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.8e-190 669.1 535 63.9
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.6e-190 668.7 447 78.1
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.0e-188 662.9 512 65.4
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 4.4e-188 661.8 510 66.1
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 7.5e-188 661.0 511 65.0
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 7.5e-188 661.0 510 65.5
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 2.2e-187 659.4 476 68.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.7e-187 658.7 476 68.1
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.4e-186 656.8 514 64.6
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.4e-186 656.0 476 67.6
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.1e-186 655.2 483 67.9
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 4.1e-186 655.2 505 65.5
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.0e-185 652.9 488 67.2
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.0e-185 652.9 569 59.6
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.5e-185 652.1 507 64.3
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 3.5e-185 652.1 511 65.9
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 7.8e-185 651.0 488 67.4
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.3e-184 650.2 511 63.4
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.7e-184 649.8 510 63.9
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 2.9e-184 649.0 525 63.4
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.1e-183 647.1 507 64.3
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.5e-183 646.0 491 66.8
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 4.3e-183 645.2 509 64.2
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 2.1e-182 642.9 509 63.7
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.3e-181 639.4 514 64.8
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 4.0e-181 638.6 510 63.1
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 4.0e-181 638.6 506 63.0
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 5.2e-181 638.3 505 63.8
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 8.9e-181 637.5 570 58.2
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.2e-180 637.1 500 64.2
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 2.0e-180 636.3 511 63.4
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 2.0e-180 636.3 493 64.7
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 4.4e-180 635.2 507 63.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 9.8e-180 634.0 500 63.4
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.3e-179 633.6 470 66.8
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.3e-179 633.6 510 62.7
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.3e-179 633.6 509 63.9
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.3e-179 633.6 490 64.3
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.1e-178 630.6 509 62.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 2.4e-178 629.4 553 60.0
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 3.2e-178 629.0 505 63.6
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 4.1e-178 628.6 457 66.1
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 7.0e-178 627.9 506 61.9
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 7.0e-178 627.9 501 63.5
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 7.0e-178 627.9 505 63.2
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.2e-177 627.1 485 66.0
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.3e-176 622.9 500 63.2
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 3.0e-176 622.5 513 62.4
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 5.0e-176 621.7 520 61.5
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 5.0e-176 621.7 514 62.5
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 2.5e-175 619.4 510 61.8
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-175 619.0 489 64.6
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 1.8e-173 613.2 489 64.0
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.1e-173 612.5 488 64.3
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.1e-173 612.5 488 64.3
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 3.4e-172 609.0 438 68.3
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.4e-172 609.0 512 61.1
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.3e-171 607.1 471 63.7
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 2.9e-171 605.9 481 63.0
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.7e-171 605.5 500 62.2
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 6.4e-171 604.7 506 62.1
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.4e-170 602.8 477 63.5
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 9.2e-170 600.9 506 60.7
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 4.6e-169 598.6 509 59.9
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 6.6e-168 594.7 432 66.0
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 6.6e-168 594.7 497 62.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 2.5e-167 592.8 435 67.1
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 2.1e-166 589.7 513 58.9
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.8e-165 586.6 499 61.5
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 6.4e-163 578.2 462 62.6
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 8.3e-163 577.8 466 61.4
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 9.2e-162 574.3 478 59.4
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.5e-161 572.4 508 63.2
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 6.0e-161 571.6 553 55.0
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.2e-156 557.4 455 60.7
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.1e-153 546.6 424 63.4
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-145 520.8 370 69.2
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.9e-143 513.5 356 70.5
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 9.6e-143 511.1 497 53.7
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 4.0e-141 505.8 414 61.8
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 6.0e-137 491.9 376 66.5
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.6e-124 449.9 227 99.6
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 8.4e-123 444.9 384 59.6
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 8.4e-123 444.9 506 48.0
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 3.2e-114 416.4 472 47.0
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 2.0e-111 407.1 239 87.4
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.0e-111 407.1 448 48.4
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 3.7e-110 402.9 390 56.4
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.9e-108 395.6 336 59.5
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-97 361.3 286 62.9
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.6e-95 353.6 327 57.5
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 3.7e-78 296.6 489 39.7
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 4.0e-72 276.6 459 40.3
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 3.7e-70 270.0 470 37.0
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.8e-64 251.1 504 35.1
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.7e-62 244.6 379 40.4
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 2.8e-57 227.3 499 33.1
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-48 198.0 156 63.5
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.5e-47 194.9 102 98.0
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 3.1e-40 170.6 250 38.8
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 6.4e-38 162.9 211 43.6
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 7.9e-28 129.4 92 68.5
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.9e-22 110.9 343 25.7
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 4.2e-21 107.1 131 49.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 5.6e-18 96.7 48 89.6
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.3e-14 85.5 106 46.2
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.5e-10 71.2 48 68.8
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-09 68.9 57 63.2
Gorai.013G139000 Gossypium raimondii HOM05D000686 ORTHO05D000512 2.8e-09 67.8 419 23.2
Nitab4.5_0000925g0140 Nicotiana tabacum HOM05D000686 ORTHO05D000512 2.6e-07 61.2 408 24.3
Gohir.A13G122300 Gossypium hirsutum HOM05D000686 ORTHO05D000512 7.6e-07 59.7 419 22.2


User provided reference genes

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