Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 4.3e-23 110.5 58 100.0
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 1.1e-18 95.9 58 91.4
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 1.1e-18 95.9 58 91.4
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 1.1e-18 95.9 58 91.4
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 1.1e-18 95.9 58 91.4
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 1.1e-18 95.9 58 91.4
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 1.4e-18 95.5 51 98.0
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 4.1e-18 94.0 58 89.7
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 4.1e-18 94.0 58 89.7
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 4.1e-18 94.0 58 89.7
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 5.4e-18 93.6 58 87.9
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 3.5e-17 90.9 58 86.2
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 4.6e-17 90.5 58 82.8
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 7.8e-17 89.7 58 86.2
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 1.3e-16 89.0 48 97.9
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 6.2e-14 80.1 58 79.3
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 4.0e-13 77.4 58 74.1
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 5.2e-13 77.0 58 74.1
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 8.9e-13 76.3 58 74.1
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 8.9e-13 76.3 58 74.1
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 8.9e-13 76.3 58 72.4
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 8.9e-13 76.3 58 72.4
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.2e-12 75.9 58 74.1
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.2e-12 75.9 58 74.1
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 2.6e-12 74.7 40 92.5
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 2.6e-12 74.7 39 94.9
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.6e-12 74.7 58 72.4
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 3.4e-12 74.3 58 69.0
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 3.4e-12 74.3 58 70.7
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 4.4e-12 73.9 58 70.7
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 4.4e-12 73.9 58 70.7
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 4.4e-12 73.9 58 70.7
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 5.8e-12 73.6 58 70.7
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 7.5e-12 73.2 58 69.0
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 7.5e-12 73.2 58 70.7
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 7.5e-12 73.2 58 70.7
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 9.8e-12 72.8 58 69.0
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 9.8e-12 72.8 58 70.7
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 9.8e-12 72.8 58 70.7
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.3e-11 72.4 58 70.7
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 1.3e-11 72.4 58 67.2
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.3e-11 72.4 58 70.7
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 2.2e-11 71.6 58 69.0
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 2.2e-11 71.6 51 72.5
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 2.2e-11 71.6 58 69.0
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.2e-11 71.6 51 72.5
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.2e-11 71.6 58 70.7
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 2.9e-11 71.2 38 92.1
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.9e-11 71.2 58 69.0
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 2.9e-11 71.2 58 67.2
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 2.9e-11 71.2 52 71.2
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 3.7e-11 70.9 58 67.2
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 3.7e-11 70.9 58 70.7
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 3.7e-11 70.9 58 67.2
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 3.7e-11 70.9 58 69.0
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 3.7e-11 70.9 58 67.2
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 3.7e-11 70.9 58 67.2
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 3.7e-11 70.9 58 69.0
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 4.9e-11 70.5 58 67.2
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 4.9e-11 70.5 58 67.2
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 4.9e-11 70.5 58 69.0
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 4.9e-11 70.5 58 69.0
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 4.9e-11 70.5 58 67.2
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 4.9e-11 70.5 58 67.2
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 4.9e-11 70.5 58 69.0
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 6.4e-11 70.1 58 63.8
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 6.4e-11 70.1 58 69.0
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 6.4e-11 70.1 58 69.0
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 8.3e-11 69.7 58 67.2
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 8.3e-11 69.7 58 69.0
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 8.3e-11 69.7 58 67.2
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 8.3e-11 69.7 51 70.6
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 8.3e-11 69.7 58 69.0
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 8.3e-11 69.7 58 69.0
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 8.3e-11 69.7 67 56.7
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 1.1e-10 69.3 58 65.5
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 1.4e-10 68.9 46 73.9
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.4e-10 68.9 58 65.5
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 2.4e-10 68.2 58 65.5
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 2.4e-10 68.2 58 65.5
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 2.4e-10 68.2 58 67.2
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 2.4e-10 68.2 58 63.8
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 3.2e-10 67.8 54 68.5
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 3.2e-10 67.8 58 65.5
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 4.1e-10 67.4 58 63.8
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 4.1e-10 67.4 58 65.5
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 4.1e-10 67.4 58 65.5
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 5.4e-10 67.0 58 65.5
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 5.4e-10 67.0 58 65.5
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 5.4e-10 67.0 58 67.2
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 5.4e-10 67.0 58 63.8
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 7.1e-10 66.6 58 65.5
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 7.1e-10 66.6 58 65.5
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 7.1e-10 66.6 58 65.5
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 7.1e-10 66.6 51 66.7
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 9.2e-10 66.2 55 67.3
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 1.2e-09 65.9 48 70.8
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 1.6e-09 65.5 58 65.5
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.6e-09 65.5 58 65.5
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 2.1e-09 65.1 40 77.5
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 2.7e-09 64.7 58 63.8
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 3.5e-09 64.3 58 62.1
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 3.5e-09 64.3 58 62.1
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 3.5e-09 64.3 58 62.1
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 3.5e-09 64.3 58 62.1
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 3.5e-09 64.3 40 75.0
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 3.5e-09 64.3 58 67.2
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 6.0e-09 63.5 40 77.5
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 7.8e-09 63.2 50 62.0
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 7.8e-09 63.2 50 62.0
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 1.0e-08 62.8 57 59.6
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 1.0e-08 62.8 47 66.0
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 1.0e-08 62.8 47 66.0
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 1.0e-08 62.8 47 66.0
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 1.0e-08 62.8 47 66.0
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 1.0e-08 62.8 58 65.5
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 1.0e-08 62.8 77 51.9
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 1.3e-08 62.4 40 77.5
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 1.7e-08 62.0 58 58.6
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 2.3e-08 61.6 48 66.7
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 3.0e-08 61.2 39 74.4
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 3.9e-08 60.8 43 67.4
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 3.9e-08 60.8 58 60.3
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 5.1e-08 60.5 45 66.7
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 5.1e-08 60.5 55 58.2
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 5.1e-08 60.5 54 64.8
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.1e-07 59.3 45 66.7
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 1.5e-07 58.9 40 72.5
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 1.9e-07 58.5 38 73.7
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 2.5e-07 58.2 54 61.1
Hund00181 Selenicereus undatus HOM05D004818 ORTHO05D005444 2.5e-07 58.2 54 61.1
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 4.3e-07 57.4 38 73.7
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 4.3e-07 57.4 58 60.3
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 4.3e-07 57.4 39 71.8
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 5.6e-07 57.0 44 63.6
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 7.3e-07 56.6 58 56.9
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 1.2e-06 55.8 38 73.7
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.2e-06 55.8 43 65.1
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 1.6e-06 55.5 82 46.3
SalBow6G3605 Salvia bowleyana HOM05D004818 ORTHO05D005444 1.6e-06 55.5 39 64.1
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 2.1e-06 55.1 38 68.4
Peaxi162Scf00538g00229 Petunia axillaris HOM05D004818 ORTHO05D005444 2.1e-06 55.1 46 60.9
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 2.8e-06 54.7 40 67.5
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 3.6e-06 54.3 54 57.4
AL3G42600 Arabidopsis lyrata HOM05D021271 ORTHO05D005444 4.7e-06 53.9 33 84.8
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 6.2e-06 53.5 35 74.3
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 8.1e-06 53.1 54 59.3
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 8.1e-06 53.1 38 71.1
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 8.1e-06 53.1 54 57.4


User provided reference genes

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