Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 1.2e-270 936.4 692 100.0
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.8e-259 898.3 701 96.6
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 1.1e-255 886.7 692 93.6
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 8.7e-232 807.4 719 80.0
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 4.8e-230 801.6 721 79.8
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 4.1e-213 745.3 703 82.5
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 2.7e-185 652.9 710 69.3
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 9.5e-170 601.3 721 66.0
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 2.3e-155 553.5 705 59.4
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 1.7e-150 537.3 719 59.5
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 1.1e-141 508.1 726 67.1
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.4e-141 507.7 713 65.5
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 7.8e-140 501.9 699 62.4
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 6.4e-134 482.3 697 58.0
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 2.1e-121 440.7 710 49.0
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 8.7e-115 418.7 696 49.9
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 8.7e-115 418.7 701 53.8
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 2.5e-114 417.2 702 48.7
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 2.5e-114 417.2 702 48.7
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 4.3e-114 416.4 685 44.5
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 4.8e-113 412.9 711 55.1
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 6.3e-113 412.5 696 44.1
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.4e-112 411.4 721 55.6
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.8e-112 411.0 682 48.7
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 4.1e-112 409.8 693 45.7
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 2.0e-111 407.5 627 46.9
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 2.6e-111 407.1 698 52.1
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 1.0e-110 405.2 682 45.0
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 2.2e-110 404.1 702 53.6
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 6.5e-110 402.5 685 47.9
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 8.5e-110 402.1 670 50.4
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 1.1e-109 401.7 714 48.5
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 2.5e-109 400.6 690 47.1
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 1.2e-108 398.3 629 52.5
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 2.1e-108 397.5 688 41.9
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 3.6e-108 396.7 687 44.7
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 4.6e-108 396.4 679 47.1
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 6.1e-108 396.0 705 53.9
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 7.9e-108 395.6 686 49.7
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 7.9e-108 395.6 703 56.0
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.3e-107 394.8 681 45.5
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.8e-107 394.4 687 47.9
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 2.3e-107 394.0 676 45.1
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 3.9e-107 393.3 712 48.0
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 3.9e-107 393.3 702 53.7
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 8.7e-107 392.1 698 47.9
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 1.1e-106 391.7 677 42.8
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 1.1e-106 391.7 682 46.0
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.5e-106 391.3 684 44.0
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 1.5e-106 391.3 702 45.9
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 2.5e-106 390.6 695 52.2
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 3.3e-106 390.2 704 50.4
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 4.3e-106 389.8 502 48.8
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 9.7e-106 388.7 694 55.5
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.2e-105 387.5 700 51.7
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 2.2e-105 387.5 718 48.5
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 3.7e-105 386.7 502 52.4
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 4.8e-105 386.3 702 52.1
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 6.3e-105 386.0 697 56.0
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 6.3e-105 386.0 697 53.7
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 1.8e-104 384.4 707 52.8
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 1.8e-104 384.4 707 51.2
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 2.4e-104 384.0 710 51.8
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 3.1e-104 383.6 697 45.1
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 5.3e-104 382.9 653 51.9
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 1.2e-103 381.7 712 49.6
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 5.9e-103 379.4 735 50.6
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 2.2e-102 377.5 685 49.2
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 8.5e-102 375.6 678 50.1
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.6e-100 371.3 502 60.4
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 3.6e-100 370.2 707 51.6
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.0e-99 368.6 504 48.2
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 2.0e-98 364.4 704 45.0
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 2.6e-98 364.0 694 49.7
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 1.3e-97 361.7 715 46.2
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 6.3e-97 359.4 616 45.6
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.1e-96 358.6 706 50.0
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.4e-96 358.2 697 48.1
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 4.1e-96 356.7 495 47.9
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 9.1e-96 355.5 715 44.3
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 1.7e-94 351.3 500 49.4
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.9e-94 350.5 728 46.0
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 5.5e-93 346.3 720 45.8
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 3.6e-92 343.6 712 49.2
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 4.7e-92 343.2 759 44.0
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 6.1e-92 342.8 510 43.9
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 2.0e-90 337.8 774 44.2
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 1.7e-89 334.7 528 56.1
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.2e-89 334.3 678 43.1
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.4e-88 330.9 528 44.7
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 9.1e-88 328.9 295 58.3
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 5.9e-87 326.2 549 45.2
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 7.7e-87 325.9 711 45.4
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 6.1e-84 316.2 687 45.4
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 8.2e-81 305.8 736 39.1
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.8e-80 304.7 639 41.2
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.6e-79 301.6 706 42.2
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 5.0e-78 296.6 384 56.0
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 1.9e-77 294.7 713 46.6
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.2e-76 292.0 635 39.8
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 3.7e-73 280.4 736 41.0
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 9.1e-72 275.8 609 36.5
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 5.9e-71 273.1 675 41.2
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 1.9e-69 268.1 535 39.6
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 6.8e-67 259.6 405 48.4
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 8.3e-65 252.7 197 67.5
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 9.5e-61 239.2 542 36.5
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 4.9e-57 226.9 178 64.0
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 1.6e-55 221.9 339 53.7
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 4.7e-52 210.3 567 31.6
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 6.2e-52 209.9 193 52.8
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 1.4e-51 208.8 195 54.4
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 1.7e-46 191.8 362 46.1
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 1.9e-45 188.3 224 46.9
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 6.0e-39 166.8 229 40.2
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 1.0e-38 166.0 203 46.3
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 6.6e-38 163.3 246 39.0
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 5.6e-37 160.2 277 42.6
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 5.2e-35 153.7 234 39.3
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 3.2e-32 144.4 113 68.1
BraA03t12436Z Brassica rapa HOM05D004723 ORTHO05D019910 1.6e-23 115.5 124 63.7
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 1.3e-22 112.5 267 39.7
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 5.1e-22 110.5 500 26.2
BcaC01g04505 Brassica carinata HOM05D004723 ORTHO05D019910 2.5e-21 108.2 123 57.7
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 2.1e-20 105.1 142 49.3
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 4.8e-20 104.0 173 41.6
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 6.2e-20 103.6 158 39.2
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.4e-19 102.4 102 51.0
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 1.7e-17 95.5 89 52.8
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.2e-17 95.1 271 35.8
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 2.9e-17 94.7 85 67.1
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 2.4e-16 91.7 59 74.6
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 3.2e-16 91.3 261 41.4
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 4.2e-16 90.9 95 54.7
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 1.2e-15 89.4 85 64.7
A03p32680 Brassica napus HOM05D004723 ORTHO05D019910 3.5e-15 87.8 83 63.9
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.3e-14 85.1 312 26.6
C03p39780 Brassica napus HOM05D004723 ORTHO05D019910 2.3e-14 85.1 117 53.8
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 8.7e-14 83.2 200 35.5
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.5e-10 72.4 79 46.8
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 3.4e-10 71.2 69 60.9
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 3.4e-10 71.2 75 50.7
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 5.8e-10 70.5 78 46.2
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 6.4e-09 67.0 69 55.1
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.4e-08 65.9 142 40.8
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.6e-07 62.4 48 54.2
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 2.1e-07 62.0 78 42.3
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.3e-06 59.3 58 53.4
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 3.9e-06 57.8 81 42.0
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 6.7e-06 57.0 69 55.1


User provided reference genes

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