Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 9.1e-215 750.0 379 100.0
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 9.1e-215 750.0 379 100.0
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.7e-213 745.7 379 99.5
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-211 739.6 380 98.9
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.2e-211 739.6 380 98.9
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.2e-198 696.4 375 94.9
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 2.8e-179 632.1 381 87.4
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.6e-179 631.7 381 87.4
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.0e-178 630.2 381 87.1
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 3.4e-177 625.2 381 87.1
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 7.8e-174 614.0 378 84.9
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 3.8e-173 611.7 378 84.9
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-172 610.1 374 86.9
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.2e-171 606.7 384 84.9
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.0e-165 584.7 379 80.7
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 8.6e-165 583.9 381 81.4
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 8.0e-163 577.4 379 80.5
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.1e-159 565.1 375 80.3
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.6e-142 510.0 391 70.8
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 7.1e-119 431.4 389 61.2
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.0e-117 427.6 251 86.5
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 3.3e-116 422.5 365 63.0
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.6e-115 420.2 402 58.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.6e-115 420.2 381 59.6
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 4.8e-115 418.7 385 61.3
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 8.2e-115 417.9 362 63.5
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.1e-114 417.5 369 62.9
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.4e-114 417.2 373 60.9
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 4.0e-114 415.6 381 59.3
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 6.9e-114 414.8 380 60.3
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 6.9e-114 414.8 384 60.2
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 9.0e-114 414.5 369 61.8
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.2e-113 414.1 369 61.2
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 2.0e-113 413.3 371 59.3
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 2.6e-113 412.9 371 59.0
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 3.4e-113 412.5 386 59.8
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 3.4e-113 412.5 383 59.5
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 5.8e-113 411.8 368 62.5
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.3e-112 410.6 376 60.6
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.3e-112 410.6 376 60.6
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 2.2e-112 409.8 375 59.7
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 3.8e-112 409.1 365 60.8
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 6.5e-112 408.3 381 59.8
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 8.4e-112 407.9 383 59.0
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 8.4e-112 407.9 362 60.8
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.9e-111 406.8 382 59.7
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 2.5e-111 406.4 356 61.5
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 3.2e-111 406.0 375 59.5
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 5.5e-111 405.2 370 60.3
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 5.5e-111 405.2 390 60.0
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 7.1e-111 404.8 380 58.4
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 9.3e-111 404.4 356 60.7
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.2e-110 404.1 371 59.3
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.2e-110 404.1 391 58.3
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.2e-110 404.1 367 59.4
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 2.1e-110 403.3 396 56.6
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 3.5e-110 402.5 365 59.2
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.5e-110 402.5 367 59.7
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.6e-110 402.1 391 57.3
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 4.6e-110 402.1 367 58.9
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 7.9e-110 401.4 358 60.3
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.0e-109 401.0 361 60.7
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.3e-109 400.6 370 59.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.3e-109 400.6 378 59.8
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.3e-109 399.8 357 61.1
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 3.9e-109 399.1 370 58.6
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 3.9e-109 399.1 358 60.1
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 5.1e-109 398.7 368 60.3
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 6.7e-109 398.3 357 59.9
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 6.7e-109 398.3 357 59.9
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 6.7e-109 398.3 364 58.2
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 6.7e-109 398.3 386 57.5
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 6.7e-109 398.3 384 57.0
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 6.7e-109 398.3 384 57.0
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 6.7e-109 398.3 369 61.2
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 8.7e-109 397.9 373 58.2
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.9e-108 396.7 370 59.2
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.9e-108 396.7 370 60.0
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.9e-108 396.7 386 57.3
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.3e-108 396.0 363 58.4
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 7.4e-108 394.8 389 57.1
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 7.4e-108 394.8 388 56.7
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.8e-107 392.9 359 59.6
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 3.7e-107 392.5 369 59.6
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 3.7e-107 392.5 375 57.1
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 4.8e-107 392.1 369 60.7
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 6.3e-107 391.7 367 59.4
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 6.3e-107 391.7 366 57.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 8.2e-107 391.3 418 54.1
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.1e-106 391.0 413 54.2
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.1e-106 391.0 420 54.5
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.4e-106 390.6 388 58.5
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-106 390.2 380 58.9
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.1e-106 389.4 373 59.0
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 6.9e-106 388.3 369 59.3
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 6.9e-106 388.3 413 54.0
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.2e-105 387.5 288 68.1
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.0e-105 386.7 376 58.5
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 4.5e-105 385.6 359 56.5
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.5e-105 385.6 382 57.9
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 4.5e-105 385.6 288 67.7
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 7.6e-105 384.8 325 61.8
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.0e-104 384.4 387 58.1
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.7e-104 383.6 383 57.4
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.9e-104 382.9 388 55.9
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 3.8e-104 382.5 388 54.4
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 5.0e-104 382.1 396 55.1
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 6.5e-104 381.7 366 57.4
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.1e-103 380.9 398 54.5
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.9e-103 380.2 378 55.0
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 3.2e-103 379.4 388 55.4
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 3.2e-103 379.4 368 56.0
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.6e-102 377.1 288 66.0
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 3.6e-102 375.9 373 55.2
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 6.1e-102 375.2 383 53.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 7.9e-102 374.8 376 57.2
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.8e-101 373.6 336 59.2
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 2.5e-100 369.8 336 59.8
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 4.8e-99 365.5 408 52.0
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 8.2e-99 364.8 288 67.0
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 2.4e-98 363.2 409 51.6
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.5e-97 359.0 337 57.9
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 7.7e-97 358.2 372 54.8
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 1.0e-96 357.8 383 51.7
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.8e-96 355.9 368 54.1
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 6.5e-96 355.1 381 53.8
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 8.5e-96 354.8 394 52.8
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 8.5e-96 354.8 364 50.3
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.4e-95 354.0 385 52.5
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 4.4e-92 342.4 368 54.3
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.8e-90 337.0 291 56.4
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.2e-89 334.3 505 43.2
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 3.8e-88 329.3 286 57.7
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.0e-85 321.2 275 61.8
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.4e-85 320.9 399 45.9
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 9.7e-84 314.7 357 51.5
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 3.1e-82 309.7 171 91.8
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.1e-79 301.2 288 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 4.2e-79 299.3 380 45.8
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 4.2e-79 299.3 158 94.3
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 3.6e-62 243.0 207 64.3
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.1e-55 221.5 300 41.0
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.4e-53 214.5 202 61.9
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.4e-53 214.5 283 40.6
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 3.7e-35 153.3 253 39.5
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.1e-26 125.2 131 58.8
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 8.7e-24 115.5 64 87.5
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.4e-21 107.5 252 33.3
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 3.5e-17 93.6 282 27.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.0e-16 92.0 156 38.5
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.7e-16 91.3 116 49.1
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 4.0e-13 80.1 71 54.9
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.8e-08 64.7 123 34.1


User provided reference genes

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