Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 2.1e-100 369.0 182 100.0
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 2.1e-100 369.0 182 100.0
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 6.1e-100 367.5 182 99.5
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 1.1e-90 336.7 183 93.4
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 1.1e-90 336.7 183 93.4
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 2.0e-87 325.9 184 88.6
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.2e-71 273.5 191 79.1
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 8.0e-68 260.8 189 78.8
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 2.0e-58 229.6 193 71.5
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 7.8e-55 217.6 186 68.3
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.1e-53 213.8 191 67.0
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 2.1e-52 209.5 191 67.0
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 8.9e-51 204.1 179 63.7
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 4.4e-50 201.8 179 63.1
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 5.8e-50 201.4 179 62.6
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 7.5e-50 201.1 172 64.5
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 1.1e-43 180.6 188 63.3
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.2e-42 177.2 173 60.7
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 5.8e-42 174.9 176 60.8
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 2.9e-41 172.6 212 54.2
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 1.6e-39 166.8 178 55.1
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.4e-35 153.7 188 50.5
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 1.2e-34 150.6 210 49.5
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 5.4e-32 141.7 170 51.2
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 2.7e-31 139.4 173 50.3
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 7.3e-29 131.3 175 45.1
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 7.3e-29 131.3 171 48.0
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 6.2e-28 128.3 175 45.7
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 2.4e-27 126.3 174 46.6
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 4.0e-27 125.6 175 46.3
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 6.9e-27 124.8 175 45.7
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 2.6e-26 122.9 201 41.3
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 2.6e-26 122.9 164 47.6
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 2.6e-26 122.9 181 45.3
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 3.4e-26 122.5 180 45.0
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 3.4e-26 122.5 186 46.8
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 9.9e-26 120.9 167 45.5
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 1.3e-25 120.6 185 46.5
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 2.2e-25 119.8 191 45.0
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 2.9e-25 119.4 188 43.1
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 2.9e-25 119.4 200 40.5
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 2.9e-25 119.4 164 45.7
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.8e-25 119.0 168 44.0
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 4.9e-25 118.6 174 46.6
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 8.4e-25 117.9 201 46.3
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 8.4e-25 117.9 185 43.2
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 1.1e-24 117.5 176 42.0
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 1.9e-24 116.7 172 46.5
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 2.4e-24 116.3 156 45.5
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 4.2e-24 115.5 166 46.4
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 5.4e-24 115.2 164 43.3
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 5.4e-24 115.2 180 41.7
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 7.1e-24 114.8 177 43.5
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 1.2e-23 114.0 162 43.2
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.1e-23 113.2 174 42.0
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.1e-23 113.2 177 42.9
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 2.7e-23 112.8 155 43.9
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.7e-23 112.8 170 43.5
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 3.5e-23 112.5 182 42.3
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 6.0e-23 111.7 174 48.3
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 7.8e-23 111.3 183 43.7
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 1.0e-22 110.9 172 42.4
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 1.3e-22 110.5 154 45.5
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 1.7e-22 110.2 179 43.6
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 2.3e-22 109.8 175 40.6
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 3.9e-22 109.0 188 39.4
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 5.1e-22 108.6 205 40.0
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 5.1e-22 108.6 150 44.0
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 6.6e-22 108.2 173 42.8
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 6.6e-22 108.2 155 47.1
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 6.6e-22 108.2 185 41.6
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 8.7e-22 107.8 173 41.6
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 1.5e-21 107.1 187 42.2
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.9e-21 106.7 171 41.5
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.3e-21 105.5 183 42.1
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 4.3e-21 105.5 183 42.1
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 5.6e-21 105.1 169 43.2
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 5.6e-21 105.1 162 42.6
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 5.6e-21 105.1 175 39.4
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 9.6e-21 104.4 160 44.4
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 9.6e-21 104.4 150 46.7
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 2.8e-20 102.8 177 40.7
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 3.6e-20 102.4 167 38.3
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 3.6e-20 102.4 165 44.2
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 8.1e-20 101.3 178 37.6
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 1.1e-19 100.9 175 39.4
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.4e-19 100.5 184 41.3
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.4e-19 100.5 182 40.7
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 1.4e-19 100.5 163 42.3
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.4e-19 99.8 158 41.1
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 2.4e-19 99.8 155 41.3
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 3.1e-19 99.4 149 38.9
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 6.9e-19 98.2 190 38.9
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 9.0e-19 97.8 162 39.5
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 2.0e-18 96.7 148 41.9
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 2.6e-18 96.3 157 42.7
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 5.8e-18 95.1 170 37.6
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 7.6e-18 94.7 101 57.4
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 7.6e-18 94.7 101 57.4
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 7.6e-18 94.7 164 38.4
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.3e-17 94.0 175 38.3
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 2.9e-17 92.8 171 38.0
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 3.8e-17 92.4 165 37.6
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 3.8e-17 92.4 150 37.3
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 4.9e-17 92.0 59 81.4
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 4.9e-17 92.0 184 39.7
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 4.9e-17 92.0 164 41.5
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.9e-16 90.1 156 41.7
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 3.2e-16 89.4 164 40.9
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 5.4e-16 88.6 161 37.9
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 7.1e-16 88.2 177 36.7
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 7.1e-16 88.2 162 37.7
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 1.2e-15 87.4 183 38.8
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 1.2e-15 87.4 181 39.2
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 1.6e-15 87.0 104 48.1
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 1.6e-15 87.0 104 48.1
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 3.0e-14 82.8 152 40.1
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 5.1e-14 82.0 153 37.3
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 5.1e-14 82.0 139 38.8
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 6.7e-14 81.6 156 38.5
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 8.7e-14 81.3 169 34.9
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 1.5e-13 80.5 139 39.6
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 3.3e-13 79.3 175 36.6
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 4.3e-13 79.0 64 60.9
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 2.1e-12 76.6 164 34.1
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 4.8e-12 75.5 138 41.3
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 6.2e-12 75.1 104 45.2
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 9.0e-11 71.2 114 45.6
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 2.2e-09 66.6 180 33.3
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 2.9e-09 66.2 54 55.6
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 4.9e-09 65.5 163 35.0
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 2.4e-08 63.2 138 29.7
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 7.1e-08 61.6 169 32.5
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 2.7e-07 59.7 136 32.4
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 3.5e-07 59.3 50 56.0
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 1.3e-06 57.4 147 27.9
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 3.9e-06 55.8 183 30.6


User provided reference genes

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