Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 7.3e-86 320.5 156 100.0
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 2.0e-83 312.4 156 98.1
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 1.1e-20 104.0 59 88.1
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 1.1e-20 104.0 59 88.1
BolC3t12564H Brassica oleracea HOM05D003257 ORTHO05D005573 1.4e-20 103.6 69 73.9
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 2.4e-20 102.8 59 86.4
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 2.4e-20 102.8 59 86.4
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 5.3e-20 101.7 59 86.4
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 9.1e-20 100.9 59 86.4
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 9.1e-20 100.9 59 86.4
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 2.0e-19 99.8 59 84.7
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 2.0e-19 99.8 59 84.7
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 2.6e-19 99.4 59 84.7
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 3.5e-19 99.0 59 81.4
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 3.5e-19 99.0 59 84.7
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 4.5e-19 98.6 59 81.4
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 5.9e-19 98.2 59 83.1
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 5.9e-19 98.2 59 83.1
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 5.9e-19 98.2 59 83.1
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 1.0e-18 97.4 59 81.4
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 1.0e-18 97.4 59 81.4
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 1.3e-18 97.1 58 82.8
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 1.3e-18 97.1 59 79.7
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.7e-18 96.7 59 79.7
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 1.7e-18 96.7 59 79.7
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 1.7e-18 96.7 59 79.7
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 2.2e-18 96.3 58 82.8
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 2.2e-18 96.3 59 79.7
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 2.9e-18 95.9 59 78.0
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 2.9e-18 95.9 59 79.7
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 3.8e-18 95.5 59 78.0
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 5.0e-18 95.1 59 79.7
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 5.0e-18 95.1 59 79.7
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 6.5e-18 94.7 65 76.9
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 6.5e-18 94.7 59 76.3
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 6.5e-18 94.7 59 76.3
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 6.5e-18 94.7 59 74.6
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 6.5e-18 94.7 59 79.7
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 6.5e-18 94.7 59 78.0
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 8.5e-18 94.4 59 81.4
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 8.5e-18 94.4 59 76.3
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 8.5e-18 94.4 59 74.6
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 8.5e-18 94.4 59 78.0
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 1.1e-17 94.0 59 83.1
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.1e-17 94.0 59 74.6
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 1.4e-17 93.6 59 74.6
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 1.4e-17 93.6 58 79.3
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 1.4e-17 93.6 59 78.0
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 1.4e-17 93.6 59 76.3
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 1.4e-17 93.6 59 74.6
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 1.4e-17 93.6 59 74.6
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 1.9e-17 93.2 59 76.3
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 1.9e-17 93.2 59 76.3
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 2.5e-17 92.8 59 74.6
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.5e-17 92.8 59 74.6
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.5e-17 92.8 56 78.6
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 2.5e-17 92.8 60 73.3
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 5.5e-17 91.7 58 77.6
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 7.2e-17 91.3 58 74.1
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 7.2e-17 91.3 58 75.9
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 7.2e-17 91.3 58 74.1
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 9.4e-17 90.9 60 71.7
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 9.4e-17 90.9 58 74.1
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 9.4e-17 90.9 59 72.9
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 9.4e-17 90.9 59 72.9
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 9.4e-17 90.9 66 68.2
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 9.4e-17 90.9 58 72.4
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.2e-16 90.5 58 75.9
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.2e-16 90.5 59 76.3
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.2e-16 90.5 59 76.3
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.2e-16 90.5 59 71.2
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 1.2e-16 90.5 59 71.2
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 2.1e-16 89.7 59 71.2
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.1e-16 89.7 59 71.2
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 2.1e-16 89.7 59 74.6
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 2.1e-16 89.7 59 74.6
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.7e-16 89.4 56 78.6
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 4.7e-16 88.6 58 72.4
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 4.7e-16 88.6 58 74.1
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 4.7e-16 88.6 59 72.9
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 4.7e-16 88.6 59 72.9
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 4.7e-16 88.6 59 74.6
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 4.7e-16 88.6 59 74.6
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 4.7e-16 88.6 59 69.5
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 4.7e-16 88.6 57 77.2
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 6.1e-16 88.2 58 74.1
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 6.1e-16 88.2 56 76.8
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 6.1e-16 88.2 58 72.4
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 6.1e-16 88.2 56 76.8
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 6.1e-16 88.2 59 69.5
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 8.0e-16 87.8 58 74.1
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 8.0e-16 87.8 59 67.8
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 8.0e-16 87.8 58 74.1
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 8.0e-16 87.8 59 69.5
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 1.0e-15 87.4 59 67.8
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.0e-15 87.4 58 74.1
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 1.0e-15 87.4 58 70.7
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 1.0e-15 87.4 59 72.9
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 1.0e-15 87.4 58 72.4
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 1.0e-15 87.4 59 69.5
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.4e-15 87.0 59 71.2
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 1.4e-15 87.0 59 72.9
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.8e-15 86.7 55 80.0
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 1.8e-15 86.7 58 69.0
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 1.8e-15 86.7 59 71.2
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 1.8e-15 86.7 58 69.0
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.8e-15 86.7 58 74.1
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 3.0e-15 85.9 59 67.8
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 3.0e-15 85.9 59 66.1
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 3.0e-15 85.9 69 66.7
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 3.9e-15 85.5 59 66.1
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 3.9e-15 85.5 59 69.5
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 3.9e-15 85.5 59 72.9
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 5.2e-15 85.1 58 72.4
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 5.2e-15 85.1 59 67.8
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 5.2e-15 85.1 58 70.7
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 6.7e-15 84.7 56 75.0
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 8.8e-15 84.3 59 66.1
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 1.1e-14 84.0 58 67.2
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 1.1e-14 84.0 53 71.7
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 1.1e-14 84.0 59 67.8
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 1.1e-14 84.0 58 67.2
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 1.5e-14 83.6 59 69.5
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 1.5e-14 83.6 59 66.1
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 2.0e-14 83.2 59 69.5
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.0e-14 83.2 59 62.7
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 4.4e-14 82.0 59 64.4
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 5.7e-14 81.6 56 75.0
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 5.7e-14 81.6 59 64.4
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 7.4e-14 81.3 59 66.1
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 9.7e-14 80.9 68 63.2
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.3e-13 80.5 59 62.7
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 1.3e-13 80.5 59 64.4
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 1.7e-13 80.1 68 61.8
BcaB01g06154 Brassica carinata HOM05D003257 ORTHO05D003749 2.2e-13 79.7 79 60.8
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 2.2e-13 79.7 59 61.0
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 3.7e-13 79.0 59 62.7
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 1.1e-12 77.4 56 69.6
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 3.1e-12 75.9 59 59.3
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 4.1e-12 75.5 59 59.3
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 7.0e-12 74.7 57 59.6
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 6.5e-10 68.2 60 58.3
BraSC76t46620Z Brassica rapa HOM05D004708 ORTHO05D107844 6.7e-07 58.2 30 86.7
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 1.5e-06 57.0 39 66.7
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 3.3e-06 55.8 57 49.1
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 5.7e-06 55.1 62 41.9
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 9.7e-06 54.3 34 70.6


User provided reference genes

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