Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p74720 Brassica napus HOM05D010646 ORTHO05D001770 2.6e-118 428.7 212 100.0
BolC9t60204H Brassica oleracea HOM05D010646 ORTHO05D001770 2.2e-117 425.6 212 99.1
BcaNung03299 Brassica carinata HOM05D010646 ORTHO05D001770 1.8e-103 379.4 186 98.9
BcaNung03304 Brassica carinata HOM05D000389 ORTHO05D000287 4.1e-100 368.2 184 98.4
BcaC06g31954 Brassica carinata HOM05D010646 ORTHO05D001770 5.8e-94 347.8 186 90.9
BcaC01g05778 Brassica carinata HOM05D010646 ORTHO05D001770 1.1e-89 333.6 186 90.9
AT5G01790 Arabidopsis thaliana HOM05D010646 ORTHO05D001770 1.3e-72 276.9 199 75.4
BcaB01g06253 Brassica carinata HOM05D010646 ORTHO05D001770 3.1e-71 272.3 188 77.7
Thhalv10014604m.g Eutrema salsugineum HOM05D010646 ORTHO05D001770 1.2e-70 270.4 198 74.7
BraA03t09397Z Brassica rapa HOM05D010646 ORTHO05D001770 2.5e-68 262.7 192 74.5
BolC3t12591H Brassica oleracea HOM05D010646 ORTHO05D001770 3.2e-68 262.3 192 74.5
A03p00080 Brassica napus HOM05D010646 ORTHO05D001770 4.2e-68 261.9 192 74.5
AL6G10240 Arabidopsis lyrata HOM05D010646 ORTHO05D001770 1.8e-66 256.5 189 74.1
Carub.0006s0004 Capsella rubella HOM05D010646 ORTHO05D001770 2.5e-65 252.7 188 72.3
CARHR212150 Cardamine hirsuta HOM05D010646 ORTHO05D001770 4.3e-65 251.9 205 68.8
C03p08280 Brassica napus HOM05D010646 ORTHO05D001770 2.9e-61 239.2 170 76.5
BolC3t13336H Brassica oleracea HOM05D010646 ORTHO05D001770 2.9e-61 239.2 170 76.5
C03p00220 Brassica napus HOM05D010646 ORTHO05D001770 2.5e-57 226.1 161 75.2
BolC3t14631H Brassica oleracea HOM05D010646 ORTHO05D001770 1.4e-47 193.7 98 95.9
Sp6g41040 Schrenkiella parvula HOM05D010646 ORTHO05D001770 5.9e-30 135.2 148 56.8
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 2.0e-14 83.6 174 37.9
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 1.5e-12 77.4 144 37.5
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 7.3e-12 75.1 124 40.3
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 2.1e-11 73.6 185 35.1
Zm00001eb282060 Zea mays HOM05D002277 ORTHO05D001770 4.7e-11 72.4 130 37.7
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 6.1e-11 72.0 185 34.6
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 1.8e-10 70.5 160 35.6
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 2.3e-10 70.1 154 36.4
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 2.3e-10 70.1 190 34.2
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 2.3e-10 70.1 174 32.2
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 2.3e-10 70.1 181 34.3
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 8.9e-10 68.2 188 37.2
Oeu024724.1 Olea europaea HOM05D002277 ORTHO05D001770 8.9e-10 68.2 182 32.4
THA.LOC104816170 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 8.9e-10 68.2 151 36.4
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 1.2e-09 67.8 100 43.0
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 1.2e-09 67.8 185 33.5
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.5e-09 67.4 186 30.6
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 2.6e-09 66.6 90 43.3
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 3.4e-09 66.2 87 49.4
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 3.4e-09 66.2 94 46.8
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.4e-09 65.9 152 35.5
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 4.4e-09 65.9 177 37.3
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 5.7e-09 65.5 109 41.3
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 5.7e-09 65.5 176 36.9
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 5.7e-09 65.5 174 35.1
SalBow3G1041 Salvia bowleyana HOM05D002277 ORTHO05D001770 5.7e-09 65.5 108 42.6
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 7.5e-09 65.1 59 61.0
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 7.5e-09 65.1 130 38.5
unitig_46.g18741 Utricularia gibba HOM05D002277 ORTHO05D001770 7.5e-09 65.1 86 46.5
Gohir.D10G187900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.8e-09 64.7 154 29.9
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 1.3e-08 64.3 173 32.4
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 1.3e-08 64.3 148 36.5
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.7e-08 63.9 87 48.3
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.7e-08 63.9 147 34.0
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.7e-08 63.9 146 34.2
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.7e-08 63.9 155 32.3
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.7e-08 63.9 68 52.9
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 2.2e-08 63.5 184 33.2
Zm00001eb350250 Zea mays HOM05D002277 ORTHO05D001770 2.2e-08 63.5 78 46.2
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 2.9e-08 63.2 195 30.8
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 2.9e-08 63.2 137 40.9
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 2.9e-08 63.2 137 40.9
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 2.9e-08 63.2 137 40.9
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 3.7e-08 62.8 146 33.6
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 3.7e-08 62.8 184 32.6
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.7e-08 62.8 155 31.6
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.7e-08 62.8 180 30.6
PGR004G0074 Punica granatum HOM05D002277 ORTHO05D001770 3.7e-08 62.8 181 34.8
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 3.7e-08 62.8 109 42.2
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 4.9e-08 62.4 162 34.0
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 6.4e-08 62.0 83 48.2
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 6.4e-08 62.0 185 31.9
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 8.3e-08 61.6 86 46.5
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 8.3e-08 61.6 104 39.4
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 1.1e-07 61.2 57 59.6
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.1e-07 61.2 72 51.4
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.1e-07 61.2 72 51.4
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.1e-07 61.2 72 51.4
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.4e-07 60.8 88 47.7
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 1.4e-07 60.8 97 38.1
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 1.8e-07 60.5 89 44.9
COL.COLO4_11188 Corchorus olitorius HOM05D002277 ORTHO05D001770 1.8e-07 60.5 70 41.4
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 1.8e-07 60.5 48 66.7
Gohir.A03G023900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.8e-07 60.5 66 47.0
Gohir.D03G144700 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.8e-07 60.5 66 47.0
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 1.8e-07 60.5 171 33.3
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.8e-07 60.5 121 35.5
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 1.8e-07 60.5 102 44.1
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 2.4e-07 60.1 74 56.8
unitig_37.g12468 Utricularia gibba HOM05D010646 ORTHO05D001770 2.4e-07 60.1 59 52.5
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 3.2e-07 59.7 178 31.5
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 4.1e-07 59.3 86 46.5
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 4.1e-07 59.3 101 36.6
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 4.1e-07 59.3 101 36.6
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.1e-07 59.3 94 40.4
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 4.1e-07 59.3 130 38.5
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 4.1e-07 59.3 195 31.8
TWI77G0059 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 4.1e-07 59.3 111 40.5
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 4.1e-07 59.3 196 34.2
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 4.1e-07 59.3 89 46.1
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 4.1e-07 59.3 189 32.3
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 4.1e-07 59.3 89 46.1
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 5.4e-07 58.9 215 30.7
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 5.4e-07 58.9 126 37.3
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 7.0e-07 58.5 188 29.8
ECA248G3276 Erigeron canadensis HOM05D002277 ORTHO05D001770 7.0e-07 58.5 89 43.8
Gorai.003G151900 Gossypium raimondii HOM05D002277 ORTHO05D001770 7.0e-07 58.5 66 47.0
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 7.0e-07 58.5 190 32.1
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 7.0e-07 58.5 44 65.9
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 7.0e-07 58.5 71 49.3
Sed0006032 Sechium edule HOM05D002277 ORTHO05D001770 7.0e-07 58.5 100 45.0
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 9.2e-07 58.2 169 27.8
Ciclev10012858m.g Citrus clementina HOM05D002277 ORTHO05D001770 9.2e-07 58.2 139 32.4
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 9.2e-07 58.2 87 44.8
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 9.2e-07 58.2 90 38.9
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 9.2e-07 58.2 103 39.8
Actinidia34486 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.2e-06 57.8 144 34.7
Solyc06g050370.1 Solanum lycopersicum HOM05D002277 ORTHO05D001770 1.2e-06 57.8 44 65.9
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 1.2e-06 57.8 108 38.0
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.6e-06 57.4 130 36.9
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 1.6e-06 57.4 137 36.5
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 1.6e-06 57.4 103 39.8
Sp4g22820 Schrenkiella parvula HOM05D002277 ORTHO05D001770 1.6e-06 57.4 86 43.0
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 1.6e-06 57.4 89 44.9
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 2.0e-06 57.0 133 34.6
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 2.0e-06 57.0 121 39.7
THA.LOC104824354 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 2.0e-06 57.0 98 41.8
HPP92_019747 Vanilla planifolia HOM05D002277 ORTHO05D001770 2.0e-06 57.0 64 54.7
A05p01740 Brassica napus HOM05D002277 ORTHO05D001770 2.7e-06 56.6 73 47.9
C04p02010 Brassica napus HOM05D002277 ORTHO05D001770 2.7e-06 56.6 73 47.9
BolC4t21852H Brassica oleracea HOM05D002277 ORTHO05D001770 2.7e-06 56.6 73 47.9
BraA05t19171Z Brassica rapa HOM05D002277 ORTHO05D001770 2.7e-06 56.6 73 47.9
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 2.7e-06 56.6 156 35.3
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 2.7e-06 56.6 77 42.9
Lalb_Chr19g0124091 Lupinus albus HOM05D002277 ORTHO05D001770 2.7e-06 56.6 183 30.6
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 3.5e-06 56.2 91 50.5
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 3.5e-06 56.2 177 28.8
C03p27010 Brassica napus HOM05D002277 ORTHO05D001770 4.6e-06 55.8 69 47.8
CiPaw.10G163800 Carya illinoinensis HOM05D002277 ORTHO05D001770 4.6e-06 55.8 190 33.7
FAN06G1120 Fragaria x ananassa HOM05D002277 ORTHO05D001770 4.6e-06 55.8 156 35.3
PSO339G6062 Papaver somniferum HOM05D002277 ORTHO05D001770 4.6e-06 55.8 45 62.2
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 4.6e-06 55.8 68 54.4
Thecc.09G361400 Theobroma cacao HOM05D002277 ORTHO05D001770 4.6e-06 55.8 57 50.9
TPR.G25757 Trifolium pratense HOM05D002277 ORTHO05D001770 4.6e-06 55.8 67 49.3
BcaC01g05398 Brassica carinata HOM05D002277 ORTHO05D001770 7.8e-06 55.1 98 40.8
Manes.08G172400 Manihot esculenta HOM05D002277 ORTHO05D001770 7.8e-06 55.1 194 32.0
Sp5g06240 Schrenkiella parvula HOM05D010959 ORTHO05D001770 7.8e-06 55.1 94 42.6
PGSC0003DMG400029071 Solanum tuberosum HOM05D002277 ORTHO05D001770 7.8e-06 55.1 141 33.3


User provided reference genes

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