Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 4.6e-33 144.1 77 100.0
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 1.3e-30 136.0 77 97.4
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 3.7e-30 134.4 80 95.0
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 5.8e-28 127.1 90 83.3
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 5.8e-28 127.1 90 83.3
BcaNung04465 Brassica carinata HOM05D004288 ORTHO05D004997 2.7e-25 118.2 67 92.5
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 2.7e-25 118.2 67 92.5
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 2.4e-21 105.1 74 71.6
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 2.4e-21 105.1 74 71.6
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 1.2e-20 102.8 74 70.3
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 1.2e-20 102.8 74 68.9
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 3.4e-20 101.3 74 66.2
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 5.9e-20 100.5 65 76.9
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 1.3e-19 99.4 75 66.7
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 1.3e-19 99.4 64 75.0
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 8.5e-19 96.7 77 63.6
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 1.1e-18 96.3 64 71.9
CARHR211400 Cardamine hirsuta HOM05D004288 ORTHO05D004997 3.8e-11 71.2 66 59.1
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 4.6e-09 64.3 41 75.6
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.0e-08 63.2 50 60.0
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 3.0e-08 61.6 40 70.0
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 6.7e-08 60.5 47 59.6
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 1.1e-07 59.7 39 69.2
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.1e-07 59.7 48 56.2
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.1e-07 59.7 45 57.8
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.1e-07 59.7 41 65.9
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 1.1e-07 59.7 41 65.9
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.5e-07 59.3 41 63.4
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.5e-07 59.3 55 52.7
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.6e-07 58.5 37 64.9
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.6e-07 58.5 37 64.9
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.6e-07 58.5 37 64.9
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.3e-07 58.2 40 65.0
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 5.7e-07 57.4 47 53.2
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 5.7e-07 57.4 47 53.2
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 5.7e-07 57.4 40 62.5
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 5.7e-07 57.4 40 62.5
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 5.7e-07 57.4 40 62.5
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 9.7e-07 56.6 44 61.4
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 9.7e-07 56.6 40 57.5
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 9.7e-07 56.6 38 65.8
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 9.7e-07 56.6 47 53.2
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 9.7e-07 56.6 45 51.1
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 1.3e-06 56.2 47 55.3
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 1.3e-06 56.2 40 57.5
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 1.3e-06 56.2 38 57.9
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.7e-06 55.8 41 58.5
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.7e-06 55.8 48 54.2
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 1.7e-06 55.8 45 60.0
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.7e-06 55.8 43 60.5
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.7e-06 55.8 41 58.5
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.2e-06 55.5 40 60.0
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 2.2e-06 55.5 44 56.8
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.2e-06 55.5 40 55.0
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 2.2e-06 55.5 40 60.0
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 2.8e-06 55.1 41 56.1
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.8e-06 55.1 40 55.0
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.8e-06 55.1 43 55.8
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 2.8e-06 55.1 50 52.0
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.8e-06 55.1 45 53.3
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 3.7e-06 54.7 37 62.2
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.7e-06 54.7 41 56.1
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 3.7e-06 54.7 41 56.1
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.7e-06 54.7 38 63.2
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 3.7e-06 54.7 43 65.1
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 3.7e-06 54.7 41 58.5
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 3.7e-06 54.7 41 53.7
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 3.7e-06 54.7 37 59.5
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 4.8e-06 54.3 43 53.5
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 4.8e-06 54.3 40 60.0
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 4.8e-06 54.3 40 57.5
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 4.8e-06 54.3 45 53.3
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 4.8e-06 54.3 45 53.3
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 4.8e-06 54.3 38 63.2
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 6.3e-06 53.9 63 46.0
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 6.3e-06 53.9 38 63.2
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 6.3e-06 53.9 40 60.0
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 6.3e-06 53.9 39 56.4
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 6.3e-06 53.9 39 56.4
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 6.3e-06 53.9 41 56.1
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 6.3e-06 53.9 40 57.5
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 8.2e-06 53.5 41 53.7
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 8.2e-06 53.5 38 63.2
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.2e-06 53.5 38 60.5
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 8.2e-06 53.5 40 57.5


User provided reference genes

Program Settings