Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 1.4e-227 792.7 421 100.0
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 1.2e-223 779.6 421 97.6
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 7.5e-210 733.8 424 92.0
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 5.2e-203 711.1 457 85.3
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 2.3e-198 695.7 423 87.0
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 5.2e-195 684.5 424 88.0
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 1.3e-193 679.9 422 85.3
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 1.5e-189 666.4 449 82.2
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 1.5e-189 666.4 422 86.0
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 9.5e-189 663.7 422 84.4
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 1.2e-186 656.8 422 83.9
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 4.1e-184 648.3 422 82.5
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 1.5e-170 603.2 421 77.9
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 2.4e-163 579.3 441 73.7
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 2.6e-162 575.9 422 78.4
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 3.5e-159 565.5 432 75.5
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 1.7e-145 520.0 433 66.5
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 1.6e-119 433.7 432 56.5
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 2.4e-115 419.9 443 54.0
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 1.7e-113 413.7 433 53.1
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 2.5e-112 409.8 431 55.0
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.5e-112 409.8 432 53.7
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 5.5e-112 408.7 437 54.2
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.6e-111 407.1 433 52.4
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 2.7e-111 406.4 433 54.3
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 2.7e-111 406.4 436 54.1
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 3.6e-111 406.0 428 52.3
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 5.1e-110 402.1 429 54.1
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 1.7e-108 397.1 437 52.4
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 4.1e-107 392.5 380 57.4
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 5.3e-107 392.1 433 52.0
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 1.0e-105 387.9 410 54.6
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 2.2e-105 386.7 422 52.6
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 2.9e-105 386.3 386 55.7
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 5.0e-105 385.6 436 52.5
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 3.2e-104 382.9 389 55.5
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 3.2e-104 382.9 422 52.6
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 2.7e-103 379.8 421 53.0
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 8.0e-103 378.3 422 52.6
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 1.5e-101 374.0 419 52.3
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 6.3e-100 368.6 437 52.6
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 1.4e-99 367.5 404 50.7
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 9.1e-99 364.8 383 52.7
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 1.0e-97 361.3 433 50.1
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 6.5e-97 358.6 437 48.1
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 4.2e-96 355.9 433 49.7
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 4.2e-96 355.9 444 49.1
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 1.2e-95 354.4 431 49.0
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 4.7e-95 352.4 436 50.7
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 1.4e-94 350.9 388 51.8
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 1.4e-94 350.9 405 48.9
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.3e-94 350.1 403 49.9
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 2.3e-94 350.1 390 51.3
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 3.0e-94 349.7 440 47.7
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 4.0e-94 349.4 433 47.6
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 7.5e-93 345.1 403 48.9
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 8.2e-92 341.7 374 53.2
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 1.8e-91 340.5 409 48.4
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 4.1e-91 339.3 387 48.8
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 5.3e-91 339.0 427 45.2
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 7.0e-91 338.6 401 48.6
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 2.7e-90 336.7 427 47.5
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 5.9e-90 335.5 413 47.7
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 5.0e-89 332.4 371 51.2
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 8.5e-89 331.6 399 47.6
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 1.9e-88 330.5 386 49.5
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 3.2e-88 329.7 392 47.7
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 4.2e-88 329.3 392 49.5
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 4.2e-88 329.3 409 48.7
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 9.4e-88 328.2 371 50.7
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 1.6e-87 327.4 402 47.0
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 4.0e-86 322.8 397 47.6
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 2.6e-85 320.1 389 47.3
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 2.8e-84 316.6 426 45.1
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 8.3e-84 315.1 455 44.2
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 2.7e-82 310.1 393 45.8
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 4.5e-82 309.3 403 44.7
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 2.6e-77 293.5 300 56.3
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 4.4e-77 292.7 384 45.1
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 4.4e-77 292.7 384 44.0
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 9.8e-77 291.6 384 44.5
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 5.9e-74 282.3 291 55.3
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 2.5e-72 276.9 291 54.3
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 3.0e-70 270.0 291 53.6
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 4.0e-70 269.6 318 50.3
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 2.6e-69 266.9 422 39.1
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 6.4e-68 262.3 531 37.1
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 6.4e-68 262.3 410 41.2
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 1.0e-65 255.0 386 40.7
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 3.3e-64 250.0 318 43.4
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 4.3e-64 249.6 306 46.4
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 2.1e-63 247.3 217 59.0
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 1.5e-61 241.1 365 43.8
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 1.6e-58 231.1 346 40.2
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 2.5e-56 223.8 251 51.4
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 1.1e-54 218.4 427 35.4
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 2.3e-54 217.2 282 45.0
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 3.1e-54 216.9 200 58.5
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 3.6e-47 193.4 397 36.3
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 6.0e-42 176.0 405 33.1
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 3.0e-41 173.7 376 33.0
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 8.7e-41 172.2 376 33.0
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 2.0e-37 161.0 240 41.2
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 9.3e-35 152.1 268 36.9
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 3.0e-33 147.1 373 30.0
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.5e-32 144.8 101 69.3
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 2.8e-31 140.6 403 28.5
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 5.4e-27 126.3 120 55.0
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 5.6e-24 116.3 95 61.1
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 1.4e-22 111.7 406 26.6
Thhalv10015964m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 1.5e-21 108.2 331 34.1
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 1.5e-21 108.2 121 53.7
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 6.4e-20 102.8 130 46.9
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 9.3e-19 99.0 167 39.5
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 2.6e-13 80.9 231 32.0
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.0e-12 79.0 132 39.4
BolC3t12644H Brassica oleracea HOM05D006045 ORTHO05D007678 6.0e-10 69.7 65 69.2


User provided reference genes

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