Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 5.3e-298 1026.9 523 100.0
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 3.2e-271 937.9 485 99.0
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 3.2e-271 937.9 485 99.0
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 1.6e-254 882.5 486 93.2
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 3.0e-240 835.1 485 88.0
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 1.7e-235 819.3 486 87.2
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 2.9e-235 818.5 486 85.8
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 1.9e-234 815.8 486 86.8
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 1.9e-234 815.8 486 86.8
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 4.6e-233 811.2 487 87.1
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 5.0e-232 807.7 485 84.1
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 8.6e-232 807.0 486 85.8
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 2.5e-231 805.4 497 84.3
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 2.9e-227 792.0 493 82.8
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 3.2e-226 788.5 481 82.3
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 4.6e-225 784.6 479 83.1
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 2.0e-220 769.2 485 79.0
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 1.3e-203 713.4 556 68.3
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 5.7e-183 644.8 486 69.5
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 1.4e-168 597.0 515 61.6
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 3.4e-164 582.4 511 60.5
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 7.7e-164 581.3 497 62.0
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 2.2e-163 579.7 486 60.9
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 2.9e-163 579.3 483 61.7
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 3.8e-163 578.9 486 60.7
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.5e-162 576.2 486 60.3
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 3.2e-162 575.9 485 62.5
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 4.2e-162 575.5 486 60.5
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 2.1e-161 573.2 530 58.3
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 6.7e-160 568.2 484 61.4
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 6.7e-160 568.2 483 59.2
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 2.6e-159 566.2 512 56.8
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.4e-159 564.7 515 57.7
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 1.3e-158 563.9 488 59.4
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 4.1e-157 558.9 515 56.9
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 9.1e-157 557.8 482 61.2
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 3.5e-156 555.8 511 56.4
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 4.5e-156 555.4 478 60.3
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 4.5e-156 555.4 518 57.1
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 7.7e-156 554.7 519 56.1
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 1.0e-155 554.3 559 54.6
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 1.3e-155 553.9 490 58.4
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 1.3e-155 553.9 513 57.3
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 1.3e-155 553.9 525 55.6
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 2.2e-155 553.1 478 60.0
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 2.2e-155 553.1 481 61.1
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 5.0e-155 552.0 483 58.6
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 8.5e-155 551.2 500 59.0
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 8.5e-155 551.2 481 58.8
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 1.1e-154 550.8 483 57.8
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 4.2e-154 548.9 482 58.7
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 5.5e-154 548.5 480 59.4
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 5.5e-154 548.5 483 58.0
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 1.2e-153 547.4 483 58.8
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 4.7e-153 545.4 485 59.6
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 1.0e-152 544.3 515 55.7
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 6.7e-152 541.6 480 58.1
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 8.8e-152 541.2 482 57.1
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 1.5e-151 540.4 464 61.9
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 2.2e-150 536.6 483 57.3
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 3.7e-150 535.8 484 58.7
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 6.3e-150 535.0 524 56.3
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 1.8e-149 533.5 484 57.9
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 2.4e-149 533.1 480 57.5
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 4.1e-149 532.3 520 55.4
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 5.3e-149 531.9 466 59.7
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 2.0e-148 530.0 483 56.9
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 4.5e-148 528.9 485 56.9
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 1.0e-147 527.7 485 55.7
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 2.2e-147 526.6 515 56.1
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 8.5e-147 524.6 524 53.1
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 1.1e-146 524.2 479 55.1
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 1.9e-146 523.5 485 56.1
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 2.5e-146 523.1 484 57.6
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 3.2e-146 522.7 430 62.1
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 5.5e-146 521.9 513 54.8
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 1.2e-145 520.8 482 55.2
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 1.4e-144 517.3 455 58.7
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 2.3e-144 516.5 483 56.5
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 6.8e-144 515.0 520 54.8
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 8.8e-144 514.6 514 55.1
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 3.7e-142 509.2 478 55.0
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.1e-141 507.7 488 56.1
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 1.1e-141 507.7 462 55.6
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 3.1e-141 506.1 509 54.8
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 4.5e-140 502.3 528 51.1
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 1.0e-139 501.1 516 53.9
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 8.6e-139 498.0 484 53.5
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 8.0e-137 491.5 433 59.4
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.1e-133 481.1 598 46.8
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 6.6e-131 471.9 318 80.5
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 1.4e-128 464.2 479 51.6
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 1.9e-125 453.8 489 49.1
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 3.5e-116 422.9 485 50.3
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 1.6e-113 414.1 424 52.8
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 2.1e-113 413.7 374 58.6
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 2.8e-113 413.3 476 48.7
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 2.3e-112 410.2 370 63.2
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 7.5e-111 405.2 437 51.9
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 3.2e-109 399.8 429 48.5
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 3.0e-99 366.7 497 42.1
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 2.1e-97 360.5 388 52.3
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 5.3e-96 355.9 196 91.3
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.5e-95 354.4 378 51.3
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 1.7e-94 350.9 506 42.3
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 1.0e-91 341.7 430 47.4
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 6.2e-89 332.4 339 53.7
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 8.1e-89 332.0 389 47.8
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 1.9e-77 294.3 405 42.7
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 6.7e-75 285.8 281 56.9
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 3.7e-73 280.0 250 58.8
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 2.6e-71 273.9 454 38.1
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 3.2e-69 266.9 427 41.0
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 3.5e-68 263.5 293 48.1
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.9e-52 209.1 173 58.4
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 1.3e-49 201.8 486 31.5
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 6.3e-49 199.5 326 38.0
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 1.1e-48 198.7 116 87.1
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 1.1e-48 198.7 116 87.1
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 3.3e-42 177.2 135 64.4
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 1.8e-40 171.4 136 61.0
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.2e-37 159.5 125 62.4
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.2e-37 159.5 125 62.4
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 5.9e-31 139.8 450 29.1
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 2.7e-28 131.0 200 39.5
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 4.5e-23 113.6 60 85.0
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 1.1e-21 109.0 116 48.3
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 4.0e-19 100.5 57 73.7
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 2.0e-18 98.2 52 82.7
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 2.2e-17 94.7 57 68.4
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 2.0e-15 88.2 222 32.0
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.7e-14 85.1 64 62.5
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 2.2e-09 68.2 74 50.0
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 6.4e-09 66.6 40 80.0


User provided reference genes

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