Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 2.6e-250 868.2 430 100.0
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 5.8e-250 867.1 430 99.8
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 1.1e-248 862.8 430 99.1
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 3.2e-248 861.3 430 98.8
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 4.9e-241 837.4 433 96.5
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 3.6e-236 821.2 433 94.2
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 2.6e-234 815.1 428 94.6
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 4.4e-234 814.3 433 93.5
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 9.9e-234 813.1 433 93.5
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 5.4e-232 807.4 428 94.2
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 6.4e-225 783.9 427 90.4
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 6.7e-214 747.3 429 85.5
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 3.7e-212 741.5 426 85.4
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 3.7e-212 741.5 427 84.3
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 2.4e-211 738.8 428 83.6
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 6.9e-211 737.3 428 83.4
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 6.9e-211 737.3 428 83.4
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 9.0e-211 736.9 421 85.5
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 1.2e-210 736.5 428 84.1
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 2.6e-210 735.3 418 85.9
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.3e-209 733.0 424 84.7
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 1.3e-209 733.0 421 85.5
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 2.9e-209 731.9 428 83.2
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 4.9e-209 731.1 429 84.6
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 6.4e-209 730.7 424 84.2
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 1.1e-208 729.9 421 84.8
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 2.4e-208 728.8 418 85.6
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 2.4e-208 728.8 425 84.0
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 5.5e-208 727.6 428 83.2
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 9.3e-208 726.9 422 83.9
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 1.6e-207 726.1 422 82.9
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 2.1e-207 725.7 427 83.4
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 2.7e-207 725.3 423 83.7
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 3.5e-207 724.9 425 82.8
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 6.0e-207 724.2 421 83.8
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 1.0e-206 723.4 428 81.3
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.8e-206 722.6 422 82.9
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 1.8e-206 722.6 423 83.0
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 8.7e-206 720.3 426 81.9
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 1.1e-205 719.9 423 83.0
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 1.1e-205 719.9 428 81.3
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 1.5e-205 719.5 427 82.4
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 1.9e-205 719.2 425 82.6
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 1.9e-205 719.2 425 82.1
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 2.5e-205 718.8 428 81.8
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 3.3e-205 718.4 428 80.8
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 7.4e-205 717.2 424 83.0
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 7.4e-205 717.2 428 80.4
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 7.4e-205 717.2 427 81.3
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 1.6e-204 716.1 422 82.0
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 1.6e-204 716.1 423 82.3
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 6.2e-204 714.1 413 85.0
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 1.1e-203 713.4 424 81.4
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 1.4e-203 713.0 457 78.8
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 1.8e-203 712.6 362 99.2
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 2.4e-203 712.2 428 80.6
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 4.0e-203 711.4 427 81.7
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 5.3e-203 711.1 424 81.4
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 9.0e-203 710.3 427 80.8
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 1.2e-202 709.9 423 81.3
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 1.2e-202 709.9 413 84.0
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 2.0e-202 709.1 418 82.3
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 2.0e-202 709.1 428 82.0
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 1.7e-201 706.1 429 80.9
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 2.2e-201 705.7 424 81.6
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 3.8e-201 704.9 438 80.8
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 3.8e-201 704.9 423 81.3
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 6.5e-201 704.1 422 81.0
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 6.5e-201 704.1 429 80.7
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 1.4e-200 703.0 424 81.1
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 1.2e-199 699.9 429 80.0
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 1.2e-199 699.9 427 79.2
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 2.3e-198 695.7 366 95.4
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 1.1e-197 693.3 426 78.4
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 1.5e-197 693.0 414 82.6
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 2.5e-197 692.2 483 72.9
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 9.7e-197 690.3 421 79.6
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 1.3e-196 689.9 424 77.4
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 3.8e-193 678.3 424 77.8
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 8.5e-193 677.2 430 78.1
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 1.9e-192 676.0 424 78.3
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 2.5e-192 675.6 424 77.4
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 2.1e-191 672.5 425 78.1
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 2.1e-191 672.5 506 69.6
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 7.4e-189 664.1 384 85.4
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 3.7e-188 661.8 381 85.8
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 4.8e-188 661.4 421 77.7
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 4.8e-188 661.4 420 78.3
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 5.3e-187 657.9 448 73.0
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 5.3e-187 657.9 386 83.4
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 5.9e-186 654.4 392 81.9
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 5.0e-185 651.4 402 77.9
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 6.5e-185 651.0 394 81.2
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 3.2e-184 648.7 423 75.4
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 4.2e-184 648.3 423 75.9
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.1e-182 641.3 418 76.6
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.1e-182 641.3 418 76.6
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 9.7e-181 637.1 426 73.5
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 1.7e-180 636.3 421 74.3
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 7.0e-179 630.9 419 71.8
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 7.7e-178 627.5 422 73.2
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 4.2e-176 621.7 424 71.0
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.6e-175 619.8 372 82.0
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 3.0e-174 615.5 424 74.5
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 2.0e-173 612.8 379 79.7
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.8e-172 608.2 441 71.0
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 9.1e-171 604.0 421 70.8
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 1.2e-170 603.6 353 84.4
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 4.5e-170 601.7 408 73.0
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.3e-169 600.1 424 71.0
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 6.1e-167 591.3 354 81.9
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 2.2e-164 582.8 414 71.0
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 3.8e-161 572.0 430 69.8
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 7.2e-160 567.8 424 65.8
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 1.0e-158 563.9 387 73.1
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 4.5e-154 548.5 307 87.6
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 1.0e-150 537.3 282 94.0
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 1.2e-146 523.9 311 83.9
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 1.7e-140 503.4 338 74.0
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 8.6e-137 491.1 288 87.8
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 5.6e-136 488.4 289 83.7
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 2.3e-126 456.4 432 54.9
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 2.5e-120 436.4 271 83.8
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 4.4e-117 425.6 450 50.2
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 9.9e-117 424.5 464 49.1
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 4.9e-116 422.2 345 67.5
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 2.4e-115 419.9 235 86.8
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 1.0e-113 414.5 270 79.3
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.7e-113 413.7 271 76.4
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 2.0e-109 400.2 414 50.5
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 8.4e-108 394.8 228 82.9
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 2.3e-105 386.7 270 76.3
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 8.7e-105 384.8 249 77.5
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 4.3e-104 382.5 228 81.6
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 4.6e-98 362.5 467 44.3
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 9.0e-94 348.2 206 87.9
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 1.0e-89 334.7 226 74.8
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 6.7e-89 332.0 188 82.4
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 2.8e-87 326.6 188 81.9
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 4.8e-87 325.9 197 82.2
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 2.5e-83 313.5 213 72.8
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.8e-71 273.5 309 53.4
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 1.4e-67 261.2 168 73.8
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 6.3e-63 245.7 146 84.9
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 7.0e-62 242.3 144 85.4
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 1.1e-59 235.0 209 62.2
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 3.9e-57 226.5 139 77.0
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 9.1e-46 188.7 221 52.0
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 1.4e-41 174.9 109 72.5
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 5.7e-40 169.5 109 71.6
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 5.4e-38 162.9 174 55.2
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 4.6e-29 133.3 78 75.6
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 1.6e-26 124.8 136 50.0
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 8.9e-25 119.0 76 81.6
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 3.4e-24 117.1 74 68.9
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 5.8e-24 116.3 91 64.8
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 2.2e-23 114.4 95 63.2
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 1.7e-20 104.8 57 82.5
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.5e-19 101.7 76 55.3
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.9e-14 84.7 61 73.8
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 9.5e-11 72.4 35 88.6
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 3.4e-08 63.9 334 25.4
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 4.1e-06 57.0 310 23.5


User provided reference genes

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