Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 7.1e-107 390.6 194 100.0
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 5.8e-101 370.9 195 95.4
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.9e-99 365.9 238 79.8
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.0e-97 360.1 224 82.6
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 1.3e-97 359.8 229 82.5
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 4.1e-94 348.2 224 81.7
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 8.8e-89 330.5 226 76.5
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 4.7e-82 308.1 228 70.2
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.0e-76 288.1 226 65.5
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 8.5e-68 260.8 143 90.9
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.4e-62 242.7 143 81.8
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.0e-45 186.4 226 44.2
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 7.3e-43 177.9 114 78.9
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.9e-38 163.3 218 41.7
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.4e-38 161.8 219 42.5
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 9.2e-38 161.0 219 42.9
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.7e-37 159.5 218 42.2
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 2.7e-37 159.5 219 42.9
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 2.7e-37 159.5 218 42.2
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 3.5e-37 159.1 218 41.7
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 4.6e-37 158.7 218 42.2
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 6.0e-37 158.3 114 71.9
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.0e-37 158.3 218 41.7
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.3e-36 157.1 217 42.4
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.9e-36 155.6 219 42.0
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 3.3e-35 152.5 220 40.5
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 3.3e-35 152.5 226 38.9
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 9.5e-35 151.0 211 41.7
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.2e-34 150.6 217 40.6
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.8e-33 146.7 214 38.3
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.3e-33 146.4 214 41.1
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 3.1e-33 146.0 224 37.9
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 5.2e-33 145.2 215 40.9
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 1.5e-32 143.7 216 37.5
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.5e-32 143.7 218 38.1
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 2.0e-32 143.3 227 37.4
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 7.5e-32 141.4 235 35.7
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 9.8e-32 141.0 206 37.9
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.3e-31 140.6 216 38.4
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.3e-31 140.6 219 39.7
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 2.2e-31 139.8 223 36.8
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.2e-31 139.8 220 38.2
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 2.9e-31 139.4 219 40.2
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 2.9e-31 139.4 217 37.8
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 4.9e-31 138.7 222 35.1
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.9e-30 136.7 200 40.5
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.4e-30 136.3 206 36.4
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 3.2e-30 136.0 204 36.8
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.1e-30 135.6 218 38.1
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 5.4e-30 135.2 221 37.6
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 9.2e-30 134.4 201 38.3
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 9.2e-30 134.4 214 36.9
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.2e-29 134.0 205 38.5
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 2.7e-29 132.9 221 36.7
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.7e-29 132.9 204 37.7
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.5e-29 132.5 221 37.1
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.6e-29 132.1 216 38.0
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 6.0e-29 131.7 200 37.0
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 6.0e-29 131.7 205 38.5
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 7.8e-29 131.3 226 34.5
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 7.8e-29 131.3 226 36.3
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.0e-28 131.0 213 38.5
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.0e-28 131.0 203 38.9
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.3e-28 130.6 200 39.5
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.3e-28 130.6 213 37.1
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.7e-28 130.2 205 37.6
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 2.3e-28 129.8 217 36.4
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 3.9e-28 129.0 196 39.3
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 5.1e-28 128.6 145 46.9
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 5.1e-28 128.6 214 35.5
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 6.6e-28 128.3 139 46.0
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.6e-28 128.3 216 34.7
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 6.6e-28 128.3 222 34.2
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 6.6e-28 128.3 197 38.6
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 8.6e-28 127.9 143 44.8
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 8.6e-28 127.9 214 36.4
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.9e-27 126.7 217 35.9
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.9e-27 126.7 218 35.3
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 2.5e-27 126.3 196 38.3
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 2.5e-27 126.3 213 34.7
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 2.5e-27 126.3 205 37.1
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.3e-27 125.9 205 36.6
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.3e-27 125.9 193 37.3
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 4.3e-27 125.6 145 45.5
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 4.3e-27 125.6 213 34.3
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 4.3e-27 125.6 144 45.8
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 5.6e-27 125.2 145 44.8
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 5.6e-27 125.2 207 37.7
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 7.3e-27 124.8 206 35.9
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.2e-26 124.0 198 36.4
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.1e-26 123.2 217 33.2
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.1e-26 123.2 139 43.9
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 2.8e-26 122.9 216 35.2
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 4.7e-26 122.1 143 42.0
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 6.2e-26 121.7 201 36.3
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.1e-25 120.9 200 35.5
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.1e-25 120.9 229 32.8
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.1e-25 120.9 139 43.9
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.1e-25 120.9 218 33.5
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 1.1e-25 120.9 145 44.8
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.1e-25 120.9 198 37.4
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 3.1e-25 119.4 204 34.8
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 4.0e-25 119.0 220 34.5
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 5.2e-25 118.6 206 37.4
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 5.2e-25 118.6 226 33.2
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 5.2e-25 118.6 205 34.6
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 5.2e-25 118.6 216 35.2
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 5.2e-25 118.6 195 37.9
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 8.9e-25 117.9 140 43.6
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 8.9e-25 117.9 217 32.3
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 8.9e-25 117.9 193 35.8
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.2e-24 117.5 206 35.9
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.2e-24 117.5 210 33.8
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 2.0e-24 116.7 206 37.4
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 2.0e-24 116.7 140 45.7
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 2.6e-24 116.3 205 36.6
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 4.4e-24 115.5 204 34.3
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 9.9e-24 114.4 143 40.6
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 9.9e-24 114.4 206 35.0
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 9.9e-24 114.4 197 36.0
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.7e-23 113.6 145 44.1
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.2e-23 113.2 186 38.7
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.8e-23 112.5 144 41.7
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 3.8e-23 112.5 205 34.6
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.8e-23 112.5 205 34.6
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 4.9e-23 112.1 204 32.8
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.9e-23 112.1 205 34.1
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 6.4e-23 111.7 221 34.8
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 6.4e-23 111.7 142 43.0
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 8.4e-23 111.3 206 37.9
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.4e-22 110.5 145 41.4
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.9e-22 110.2 217 33.2
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 1.9e-22 110.2 246 30.1
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.4e-22 109.8 209 33.5
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 3.2e-22 109.4 215 35.8
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.2e-22 109.4 216 32.9
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.1e-22 109.0 210 33.8
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 4.1e-22 109.0 217 34.1
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 9.2e-22 107.8 222 31.5
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.2e-21 107.5 142 43.0
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.6e-21 107.1 205 34.6
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 3.5e-21 105.9 145 40.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 3.5e-21 105.9 196 30.6
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 4.6e-21 105.5 150 37.3
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.3e-20 104.0 230 31.7
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.3e-20 104.0 218 31.2
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.0e-20 102.8 150 37.3
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 3.0e-20 102.8 237 32.9
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 6.6e-20 101.7 172 36.6
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 8.6e-20 101.3 205 33.7
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.9e-19 100.1 152 37.5
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 4.3e-19 99.0 200 32.5
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 5.6e-19 98.6 156 37.2
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 7.3e-19 98.2 145 33.8
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 3.6e-18 95.9 167 34.1
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.4e-17 94.0 218 31.2
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.4e-17 94.0 218 31.2
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.8e-17 93.6 174 34.5
Aa31LG1G22160 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.6e-16 89.7 94 52.1
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 2.6e-16 89.7 144 37.5
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 4.4e-16 89.0 132 37.9
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.1e-14 84.3 126 37.3
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.0e-12 77.8 206 31.6
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 5.1e-12 75.5 108 40.7
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 2.5e-11 73.2 114 35.1
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 9.6e-11 71.2 69 49.3
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.6e-10 69.3 152 30.9
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 9.9e-08 61.2 80 38.8
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.4e-06 57.4 65 46.2


User provided reference genes

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