Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 0.0e+00 1411.7 854 100.0
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 0.0e+00 1411.7 854 100.0
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 0.0e+00 1344.3 856 95.9
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 0.0e+00 1344.3 856 95.9
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 0.0e+00 1336.2 855 95.7
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 0.0e+00 1239.6 868 83.3
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 0.0e+00 1229.2 860 88.4
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 0.0e+00 1156.4 864 84.0
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 0.0e+00 1133.2 864 83.6
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 0.0e+00 1130.9 864 83.2
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 0.0e+00 1092.8 907 73.1
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 4.5e-270 934.9 806 73.4
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 5.7e-209 731.9 860 59.8
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 1.1e-207 727.6 863 61.0
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 1.4e-202 710.7 812 60.5
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.2e-200 703.4 865 58.6
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 2.1e-190 670.2 858 57.0
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 1.3e-189 667.5 813 59.5
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 8.9e-186 654.8 858 54.5
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 3.8e-184 649.4 831 56.0
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 5.4e-183 645.6 704 63.4
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 7.1e-183 645.2 837 56.3
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 1.2e-182 644.4 857 54.6
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 2.1e-182 643.7 846 57.2
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 6.0e-182 642.1 783 58.1
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 1.3e-181 641.0 693 64.2
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 1.3e-181 641.0 838 56.6
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 2.3e-181 640.2 785 58.7
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 5.1e-181 639.0 829 56.6
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.1e-178 631.3 842 54.4
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.8e-178 630.6 844 54.6
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 3.4e-177 626.3 810 56.4
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 8.4e-176 621.7 789 49.9
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 1.4e-175 620.9 791 56.9
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 9.3e-175 618.2 789 49.8
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 1.6e-174 617.5 785 57.1
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 6.0e-174 615.5 840 55.5
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.7e-173 614.0 863 54.6
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 1.1e-172 611.3 817 56.1
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 3.3e-172 609.8 872 53.8
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 1.8e-170 604.0 743 58.7
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 6.9e-170 602.1 747 56.4
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 2.6e-169 600.1 783 56.3
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 4.5e-169 599.4 836 54.7
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 5.8e-169 599.0 866 53.3
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 9.9e-169 598.2 816 55.9
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.7e-168 597.4 783 51.0
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 3.8e-168 596.3 787 54.9
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 7.9e-166 588.6 812 53.9
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.0e-165 588.2 848 48.3
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 1.0e-165 588.2 743 56.3
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 3.0e-165 586.6 745 56.5
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 8.7e-165 585.1 864 53.5
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.5e-164 584.3 842 52.7
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 4.3e-164 582.8 866 53.1
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 9.6e-164 581.6 752 57.2
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 1.6e-163 580.9 864 53.0
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 1.1e-162 578.2 755 57.0
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 6.9e-162 575.5 865 51.1
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 1.5e-161 574.3 754 56.1
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 5.8e-161 572.4 789 54.2
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 1.3e-160 571.2 855 51.2
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 2.9e-160 570.1 860 52.3
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 3.8e-160 569.7 784 55.4
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.4e-159 567.8 819 48.0
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 5.5e-159 565.8 790 54.3
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 6.0e-158 562.4 763 55.6
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.3e-157 561.2 837 48.6
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.3e-157 561.2 858 45.9
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 1.8e-157 560.8 861 51.8
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 5.6e-156 555.8 784 53.8
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 7.4e-156 555.4 795 53.2
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 1.3e-155 554.7 797 46.5
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 1.6e-155 554.3 790 54.7
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 1.3e-152 544.7 863 49.5
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 1.1e-151 541.6 811 51.3
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 3.2e-151 540.0 872 50.9
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 1.5e-148 531.2 797 53.6
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 4.8e-147 526.2 796 53.4
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 1.7e-144 517.7 845 48.4
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 2.2e-144 517.3 785 46.5
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 2.1e-142 510.8 828 51.3
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 6.1e-142 509.2 866 49.9
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 6.7e-133 479.2 783 37.8
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 2.2e-128 464.2 779 49.7
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 6.3e-123 446.0 592 59.3
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 8.8e-117 425.6 785 41.8
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 3.8e-112 410.2 805 44.7
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 2.1e-102 377.9 527 60.3
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 1.2e-97 362.1 574 47.9
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 5.8e-92 343.2 228 79.8
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 5.8e-84 316.6 539 54.5
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.2e-81 308.9 792 42.0
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 2.0e-81 308.1 391 56.8
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 3.5e-81 307.4 660 32.6
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 1.4e-77 295.4 407 61.2
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.2e-66 257.7 804 39.3
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 1.7e-64 251.9 721 39.5
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 2.4e-58 231.5 252 47.2
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 1.5e-47 195.7 227 48.5
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 1.2e-44 186.0 509 34.8
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 1.8e-40 172.2 314 48.4
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.1e-21 109.8 158 42.4
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 1.1e-18 99.8 143 41.3
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 3.6e-17 94.7 105 44.8
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.0e-16 93.2 74 60.8
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 2.4e-13 82.0 119 39.5
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 5.2e-08 64.3 227 41.4


User provided reference genes

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