Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.0e-48 196.4 100 100.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.0e-48 196.4 100 100.0
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 2.5e-47 191.8 100 97.0
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 2.5e-47 191.8 100 97.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 7.3e-39 163.7 100 84.0
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.4e-34 147.5 100 79.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 6.9e-29 130.6 101 73.3
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 2.9e-27 125.2 103 69.9
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.0e-20 102.4 66 74.2
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 6.5e-11 70.9 100 47.0
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 9.3e-10 67.0 100 44.0
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 2.1e-09 65.9 101 41.6
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 3.5e-09 65.1 51 60.8
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 7.9e-09 63.9 54 57.4
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.0e-08 63.5 99 41.4
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-08 63.2 95 44.2
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.3e-08 63.2 93 37.6
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.8e-08 62.8 95 44.2
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.8e-08 62.8 48 60.4
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 2.3e-08 62.4 101 42.6
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 2.3e-08 62.4 52 63.5
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.0e-08 62.0 102 42.2
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 3.9e-08 61.6 52 61.5
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.9e-08 61.6 92 42.4
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.9e-08 61.6 99 37.4
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 5.1e-08 61.2 102 39.2
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.1e-08 61.2 39 66.7
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.7e-08 60.8 99 42.4
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 6.7e-08 60.8 104 41.3
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 6.7e-08 60.8 45 57.8
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 6.7e-08 60.8 94 40.4
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 6.7e-08 60.8 92 42.4
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 8.7e-08 60.5 90 44.4
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 1.1e-07 60.1 92 41.3
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-07 59.7 100 43.0
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.5e-07 59.7 97 36.1
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.5e-07 59.7 94 40.4
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.5e-07 59.7 66 47.0
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.5e-07 58.9 40 65.0
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 2.5e-07 58.9 90 40.0
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-07 58.9 50 58.0
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-07 58.9 50 58.0
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 2.5e-07 58.9 100 39.0
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.5e-07 58.9 38 71.1
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 3.3e-07 58.5 38 71.1
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.3e-07 58.5 100 39.0
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 3.3e-07 58.5 100 38.0
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.3e-07 58.5 100 38.0
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.3e-07 58.2 47 66.0
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.3e-07 58.2 90 40.0
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 4.3e-07 58.2 53 56.6
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.3e-07 58.2 53 56.6
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 4.3e-07 58.2 104 38.5
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 4.3e-07 58.2 37 73.0
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 5.7e-07 57.8 94 41.5
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.7e-07 57.8 37 70.3
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 5.7e-07 57.8 69 44.9
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 5.7e-07 57.8 95 40.0
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.7e-07 57.8 38 68.4
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 7.4e-07 57.4 94 44.7
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.4e-07 57.4 95 40.0
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.4e-07 57.4 42 57.1
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 7.4e-07 57.4 37 73.0
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 9.6e-07 57.0 92 40.2
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 9.6e-07 57.0 33 75.8
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 9.6e-07 57.0 33 75.8
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 9.6e-07 57.0 36 66.7
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 9.6e-07 57.0 36 66.7
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.6e-07 57.0 92 38.0
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.6e-07 57.0 100 35.0
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.3e-06 56.6 42 61.9
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.3e-06 56.6 100 38.0
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.3e-06 56.6 83 44.6
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.3e-06 56.6 83 43.4
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 1.3e-06 56.6 96 41.7
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-06 56.6 93 41.9
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-06 56.6 93 41.9
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.3e-06 56.6 37 67.6
C09p51010 Brassica napus HOM05D003745 ORTHO05D004215 1.6e-06 56.2 26 100.0
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.6e-06 56.2 33 72.7
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.6e-06 56.2 51 49.0
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-06 56.2 43 60.5
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.6e-06 56.2 93 43.0
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.1e-06 55.8 91 40.7
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.1e-06 55.8 95 40.0
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 2.1e-06 55.8 95 40.0
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 2.1e-06 55.8 97 39.2
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 2.1e-06 55.8 94 33.0
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.1e-06 55.8 94 41.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.8e-06 55.5 40 65.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.8e-06 55.5 101 39.6
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.8e-06 55.5 33 72.7
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 2.8e-06 55.5 95 35.8
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 2.8e-06 55.5 100 36.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.7e-06 55.1 91 39.6
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 3.7e-06 55.1 40 62.5
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 3.7e-06 55.1 41 63.4
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.7e-06 55.1 102 37.3
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.7e-06 55.1 33 69.7
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 4.8e-06 54.7 44 63.6
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 4.8e-06 54.7 93 39.8
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 4.8e-06 54.7 52 53.8
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.8e-06 54.7 51 51.0
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 4.8e-06 54.7 93 40.9
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 4.8e-06 54.7 96 40.6
Os12g0147800 Oryza sativa ssp. japonica HOM05D021295 ORTHO05D023052 4.8e-06 54.7 55 52.7
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.8e-06 54.7 96 38.5
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.8e-06 54.7 94 41.5
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.8e-06 54.7 100 38.0
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 6.2e-06 54.3 92 39.1
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 6.2e-06 54.3 43 58.1
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 6.2e-06 54.3 100 35.0
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 6.2e-06 54.3 100 37.0
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 8.2e-06 53.9 93 36.6
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.2e-06 53.9 99 40.4
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 8.2e-06 53.9 93 35.5


User provided reference genes

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