Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 1.6e-258 895.6 456 100.0
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 1.3e-255 885.9 459 99.1
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 1.6e-250 869.0 458 96.5
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 1.6e-250 869.0 458 96.5
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 1.4e-230 802.7 441 92.5
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 6.6e-228 793.9 441 91.4
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.4e-225 786.2 441 90.5
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 4.7e-218 761.1 440 86.4
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 3.4e-216 755.0 440 85.5
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 2.2e-215 752.3 463 82.9
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 3.9e-180 635.2 437 73.5
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 3.8e-167 592.0 440 67.5
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 1.9e-166 589.7 408 74.5
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.2e-162 576.2 437 66.1
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 8.2e-162 574.3 437 65.9
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 4.1e-161 572.0 439 64.7
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 6.5e-159 564.7 435 64.6
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 8.5e-159 564.3 432 64.8
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 8.5e-159 564.3 435 65.1
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 1.6e-157 560.1 441 63.9
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 2.7e-157 559.3 441 63.3
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 4.6e-157 558.5 435 64.8
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 7.9e-157 557.8 437 63.8
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.0e-156 557.4 444 63.7
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.3e-156 556.2 444 63.7
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 2.3e-156 556.2 441 63.0
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 8.8e-156 554.3 435 61.6
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 2.6e-155 552.7 442 63.8
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 4.4e-155 552.0 433 64.4
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 6.3e-154 548.1 439 64.0
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 5.3e-153 545.0 439 62.0
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 1.5e-152 543.5 437 62.7
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 2.0e-152 543.1 437 61.6
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 2.6e-152 542.7 434 62.7
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 2.6e-152 542.7 434 62.7
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 3.4e-152 542.3 461 61.2
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 1.0e-151 540.8 438 63.5
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 1.3e-151 540.4 437 62.5
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 2.2e-151 539.7 412 65.8
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 3.8e-151 538.9 439 62.2
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 6.5e-151 538.1 437 62.7
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 1.9e-150 536.6 437 62.5
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 3.6e-149 532.3 439 61.3
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 6.1e-149 531.6 435 63.0
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 1.0e-148 530.8 438 61.2
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 3.0e-148 529.3 441 60.1
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 1.1e-147 527.3 438 60.3
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.5e-147 526.9 461 59.9
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 4.4e-147 525.4 436 59.2
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 1.3e-146 523.9 506 54.5
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 1.1e-145 520.8 442 58.8
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.1e-145 520.8 387 67.4
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.4e-145 520.4 435 58.2
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 1.4e-145 520.4 439 58.8
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 2.6e-144 516.2 466 57.3
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 4.5e-144 515.4 433 59.8
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 1.3e-143 513.8 435 59.3
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.5e-142 509.6 292 87.0
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 9.4e-142 507.7 427 60.0
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 2.7e-141 506.1 555 51.0
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 3.6e-141 505.8 468 56.2
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 8.0e-141 504.6 436 58.0
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.8e-140 503.4 487 54.8
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 4.0e-140 502.3 468 54.7
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.5e-139 500.4 386 65.8
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 2.6e-139 499.6 448 58.9
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 4.4e-139 498.8 433 58.4
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 2.2e-138 496.5 439 58.3
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 1.4e-137 493.8 363 67.2
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 1.4e-137 493.8 382 64.9
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 1.8e-137 493.4 434 60.1
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 4.1e-137 492.3 437 58.4
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 1.7e-135 486.9 386 62.2
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.2e-133 480.7 386 61.1
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 2.1e-133 479.9 439 56.7
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.0e-132 477.6 436 56.4
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 1.6e-128 463.8 565 47.3
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 2.3e-127 459.9 371 64.4
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.1e-126 457.6 466 52.6
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 4.2e-126 455.7 427 53.6
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 1.2e-125 454.1 417 56.6
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 7.5e-123 444.9 431 53.4
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 1.5e-115 420.6 426 52.1
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 1.1e-113 414.5 318 65.1
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 4.1e-113 412.5 391 54.2
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 5.4e-113 412.1 488 47.3
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 1.7e-111 407.1 336 61.6
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 4.0e-108 396.0 326 63.2
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 2.7e-104 383.3 430 48.8
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 4.3e-102 375.9 435 47.8
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 8.1e-101 371.7 429 46.2
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.3e-98 364.4 291 61.5
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 2.7e-96 356.7 428 44.4
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 5.2e-92 342.4 252 68.3
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 8.9e-92 341.7 280 62.5
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 4.9e-90 335.9 312 55.8
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 3.1e-84 316.6 363 47.1
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 1.5e-78 297.7 287 56.1
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 1.9e-57 227.6 197 61.9
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 7.4e-54 215.7 284 44.4
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.1e-52 211.8 122 86.1
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 1.4e-49 201.4 180 58.9
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 7.2e-49 199.1 150 66.0
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 8.8e-47 192.2 304 37.2
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 4.8e-45 186.4 155 61.3
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 2.5e-41 174.1 223 44.4
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 7.9e-40 169.1 127 63.8
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.4e-39 168.3 352 31.0
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.3e-39 167.5 98 84.7
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 2.3e-39 167.5 148 58.8
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 6.7e-39 166.0 156 57.7
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 3.5e-35 153.7 131 58.0
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 2.4e-28 131.0 92 63.0
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 4.1e-28 130.2 95 62.1
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 7.0e-28 129.4 92 63.0
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.6e-22 110.9 71 77.5
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 7.5e-22 109.4 70 75.7
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 7.7e-19 99.4 64 78.1
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 7.7e-19 99.4 64 78.1
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 5.5e-17 93.2 356 27.0
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 2.1e-16 91.3 59 74.6
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 1.5e-14 85.1 156 33.3
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 3.5e-11 73.9 56 58.9
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 1.0e-10 72.4 64 53.1
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 1.2e-08 65.5 48 58.3


User provided reference genes

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