Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p71610 Brassica napus HOM05D018241 ORTHO05D021916 4.5e-115 417.9 210 100.0
C09p71680 Brassica napus HOM05D018241 ORTHO05D021916 3.5e-67 258.8 164 82.3
A10p31090 Brassica napus HOM05D018241 ORTHO05D021916 1.6e-59 233.4 150 82.0
BraA10t45153Z Brassica rapa HOM05D018241 ORTHO05D021916 1.6e-59 233.4 150 82.0
C09p71650 Brassica napus HOM05D018241 ORTHO05D021916 2.2e-45 186.4 132 78.0
A09p15040 Brassica napus HOM05D000571 ORTHO05D000435 2.3e-34 149.8 326 36.5
BolC9t59923H Brassica oleracea HOM05D000571 ORTHO05D000435 1.9e-33 146.7 373 34.3
BraA09t37149Z Brassica rapa HOM05D000571 ORTHO05D000435 6.9e-31 138.3 345 33.6
BraA10t45155Z Brassica rapa HOM05D000571 ORTHO05D000435 3.5e-27 125.9 353 32.0
C09p71700 Brassica napus HOM05D002990 ORTHO05D003954 7.9e-27 124.8 98 70.4
A10p31110 Brassica napus HOM05D002990 ORTHO05D003954 6.3e-24 115.2 94 68.1
BcaC06g32218 Brassica carinata HOM05D018241 ORTHO05D021916 2.5e-20 103.2 77 74.0
Carub.0006s0400 Capsella rubella HOM05D000571 ORTHO05D000435 4.6e-19 99.0 112 55.4
Thhalv10015437m.g Eutrema salsugineum HOM05D000571 ORTHO05D000435 5.1e-18 95.5 361 28.3
AL6G14850 Arabidopsis lyrata HOM05D000571 ORTHO05D000435 6.7e-18 95.1 113 56.6
C09p72000 Brassica napus HOM05D000571 ORTHO05D000435 2.5e-17 93.2 64 75.0
AT5G05070 Arabidopsis thaliana HOM05D000571 ORTHO05D000435 2.8e-16 89.7 112 53.6
Sp6g37760 Schrenkiella parvula HOM05D000571 ORTHO05D000435 5.3e-15 85.5 64 68.8
BraA07t28209Z Brassica rapa HOM05D000571 ORTHO05D107947 9.1e-15 84.7 52 84.6
CARHR208200 Cardamine hirsuta HOM05D000571 ORTHO05D000435 3.4e-14 82.8 64 68.8
A03p02050 Brassica napus HOM05D002990 ORTHO05D003954 7.7e-14 81.6 64 65.6
C03p02400 Brassica napus HOM05D002990 ORTHO05D003954 7.7e-14 81.6 64 65.6
BraA03t09574Z Brassica rapa HOM05D002990 ORTHO05D003954 7.7e-14 81.6 64 65.6
THA.LOC104826882 Tarenaya hassleriana HOM05D000571 ORTHO05D000435 1.6e-11 73.9 51 68.6
Aa31LG11G5890 Aethionema arabicum HOM05D000571 ORTHO05D000435 1.8e-10 70.5 97 50.5
THA.LOC104823162 Tarenaya hassleriana HOM05D000571 ORTHO05D000435 2.6e-09 66.6 51 64.7
Atru.chr1.1537 Acer truncatum HOM05D000571 ORTHO05D000435 3.3e-09 66.2 80 41.2
Duzib106G0818 Durio zibethinus HOM05D000571 ORTHO05D000435 3.3e-09 66.2 106 38.7
Lj1A1078G64 Lonicera japonica HOM05D000571 ORTHO05D000435 9.7e-09 64.7 51 58.8
Duzib093G1734 Durio zibethinus HOM05D000571 ORTHO05D000435 1.3e-08 64.3 58 51.7
CSS0021476 Camellia sinensis var. sinensis HOM05D000571 ORTHO05D000435 2.8e-08 63.2 52 57.7
Dinv11632 Davidia involucrata HOM05D000571 ORTHO05D000435 2.8e-08 63.2 52 57.7
AUR62018441 Chenopodium quinoa HOM05D000571 ORTHO05D000435 3.7e-08 62.8 64 56.2
Ciclev10013374m.g Citrus clementina HOM05D000571 ORTHO05D000435 3.7e-08 62.8 52 51.9
Thecc.05G115700 Theobroma cacao HOM05D000571 ORTHO05D000435 3.7e-08 62.8 108 35.2
Ah.04g150210 Amaranthus hybridus HOM05D000571 ORTHO05D000435 6.3e-08 62.0 51 54.9
EL10Ac3g07348 Beta vulgaris HOM05D000571 ORTHO05D000435 8.2e-08 61.6 65 50.8
Cpa.g.sc92.59 Carica papaya HOM05D000571 ORTHO05D000435 8.2e-08 61.6 58 51.7
Hund19055 Selenicereus undatus HOM05D000571 ORTHO05D000435 8.2e-08 61.6 65 52.3
AUR62020992 Chenopodium quinoa HOM05D000571 ORTHO05D000435 1.1e-07 61.2 64 54.7
Nitab4.5_0001270g0150 Nicotiana tabacum HOM05D000571 ORTHO05D000435 3.1e-07 59.7 54 50.0
Sc13g0000770 Simmondsia chinensis HOM05D000571 ORTHO05D000435 3.1e-07 59.7 52 50.0
Solyc10g077060.3 Solanum lycopersicum HOM05D000571 ORTHO05D000435 3.1e-07 59.7 58 51.7
Sopen10g028740 Solanum pennellii HOM05D000571 ORTHO05D000435 3.1e-07 59.7 58 51.7
PGSC0003DMG400007186 Solanum tuberosum HOM05D000571 ORTHO05D000435 3.1e-07 59.7 58 51.7
GSVIVG01025843001 Vitis vinifera HOM05D000571 ORTHO05D000435 5.3e-07 58.9 86 41.9
Glyma.19G124000 Glycine max HOM05D000571 ORTHO05D000435 7.0e-07 58.5 52 53.8
Peaxi162Scf00003g05376 Petunia axillaris HOM05D000571 ORTHO05D000435 9.1e-07 58.2 58 46.6
Nitab4.5_0000123g0200 Nicotiana tabacum HOM05D000571 ORTHO05D000435 1.2e-06 57.8 58 46.6
TPR.G23198 Trifolium pratense HOM05D000571 ORTHO05D000435 1.2e-06 57.8 58 53.4
TWI74G1531 Tripterygium wilfordii HOM05D000571 ORTHO05D000435 1.2e-06 57.8 52 51.9
Lalb_Chr14g0365321 Lupinus albus HOM05D000571 ORTHO05D000435 1.5e-06 57.4 58 50.0
RcHm_v2.0_Chr3g0494561 Rosa chinensis HOM05D000571 ORTHO05D000435 1.5e-06 57.4 52 53.8
CiPaw.10G123200 Carya illinoinensis HOM05D000571 ORTHO05D000435 2.0e-06 57.0 80 38.8
Phvul.001G094701 Phaseolus vulgaris HOM05D000571 ORTHO05D000435 2.0e-06 57.0 52 50.0
arahy.Tifrunner.gnm1.ann1.3WTG0S Arachis hypogaea HOM05D000571 ORTHO05D000435 2.6e-06 56.6 65 50.8
arahy.Tifrunner.gnm1.ann1.D34J8Q Arachis hypogaea HOM05D000571 ORTHO05D000435 2.6e-06 56.6 65 50.8
CAN.G959.35 Capsicum annuum HOM05D000571 ORTHO05D000435 2.6e-06 56.6 58 46.6
Prupe.7G020700 Prunus persica HOM05D000571 ORTHO05D000435 2.6e-06 56.6 52 53.8
Gohir.A01G193000 Gossypium hirsutum HOM05D000571 ORTHO05D000435 3.5e-06 56.2 58 44.8
Gohir.D01G183300 Gossypium hirsutum HOM05D000571 ORTHO05D000435 3.5e-06 56.2 58 44.8
Gorai.002G226400 Gossypium raimondii HOM05D000571 ORTHO05D000435 3.5e-06 56.2 58 44.8
Lalb_Chr22g0358021 Lupinus albus HOM05D000571 ORTHO05D000435 3.5e-06 56.2 63 46.0
Rhsim04G0118800 Rhododendron simsii HOM05D000571 ORTHO05D000435 3.5e-06 56.2 52 51.9
Cc06_g22760 Coffea canephora HOM05D000571 ORTHO05D000435 5.9e-06 55.5 105 35.2
MD00G1118200 Malus domestica HOM05D000571 ORTHO05D000435 5.9e-06 55.5 52 51.9
PSO541G5344 Papaver somniferum HOM05D000571 ORTHO05D000435 5.9e-06 55.5 52 51.9
PSO675G2405 Papaver somniferum HOM05D000571 ORTHO05D000435 5.9e-06 55.5 52 51.9
Psat3g082600 Pisum sativum HOM05D000571 ORTHO05D000435 5.9e-06 55.5 59 49.2
Sc25g0005600 Simmondsia chinensis HOM05D000571 ORTHO05D000435 7.7e-06 55.1 65 47.7


User provided reference genes

Program Settings