Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p71510 Brassica napus HOM05D010812 ORTHO05D004682 0.0e+00 1109.7 571 100.0
BraA10t45145Z Brassica rapa HOM05D010812 ORTHO05D004682 1.3e-294 1015.8 576 93.1
A10p31000 Brassica napus HOM05D010812 ORTHO05D004682 8.6e-294 1013.1 576 92.7
BcaC06g32228 Brassica carinata HOM05D010812 ORTHO05D004682 1.2e-210 736.9 575 75.8
Thhalv10013098m.g Eutrema salsugineum HOM05D010812 ORTHO05D004682 1.7e-204 716.5 609 71.1
Sp6g37640 Schrenkiella parvula HOM05D010812 ORTHO05D004682 1.7e-196 689.9 611 69.1
AT5G05190 Arabidopsis thaliana HOM05D010812 ORTHO05D004682 9.5e-184 647.5 643 63.1
BcaB01g05719 Brassica carinata HOM05D010812 ORTHO05D004682 3.6e-175 619.0 737 55.4
AL6G15030 Arabidopsis lyrata HOM05D010812 ORTHO05D004682 1.4e-171 607.1 630 61.0
C03p02570 Brassica napus HOM05D010812 ORTHO05D004682 4.3e-168 595.5 696 57.6
Carub.0006s0412 Capsella rubella HOM05D010812 ORTHO05D004682 1.6e-167 593.6 681 57.1
BolC3t12809H Brassica oleracea HOM05D010812 ORTHO05D004682 8.1e-167 591.3 696 57.5
BcaB01g05942 Brassica carinata HOM05D010812 ORTHO05D004682 3.1e-166 589.3 696 57.3
BraA03t09587Z Brassica rapa HOM05D010812 ORTHO05D004682 2.6e-165 586.3 709 56.1
A03p02230 Brassica napus HOM05D010812 ORTHO05D004682 3.0e-161 572.8 744 53.5
CARHR208070 Cardamine hirsuta HOM05D010812 ORTHO05D004682 2.3e-153 546.6 592 60.6
Aa31LG11G6050 Aethionema arabicum HOM05D010812 ORTHO05D004682 2.8e-90 337.0 706 41.4
THA.LOC104826873 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 7.3e-83 312.4 648 41.4
THA.LOC104816507 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 2.8e-82 310.5 599 40.7
MD01G1169800 Malus domestica HOM05D005345 ORTHO05D004682 8.5e-23 112.8 134 48.5
Gohir.A13G007900 Gossypium hirsutum HOM05D005345 ORTHO05D004682 9.3e-22 109.4 596 27.2
Gohir.A10G177500 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.2e-21 109.0 249 34.1
Oeu018746.1 Olea europaea HOM05D005345 ORTHO05D004682 2.1e-21 108.2 139 46.0
Oeu018747.2 Olea europaea HOM05D005345 ORTHO05D004682 2.1e-21 108.2 139 46.0
GSVIVG01032655001 Vitis vinifera HOM05D005345 ORTHO05D004682 3.6e-21 107.5 157 43.3
Gorai.011G206300 Gossypium raimondii HOM05D005345 ORTHO05D004682 6.1e-21 106.7 122 48.4
MD07G1235500 Malus domestica HOM05D005345 ORTHO05D004682 7.9e-21 106.3 269 32.3
Thecc.10G185200 Theobroma cacao HOM05D005345 ORTHO05D004682 1.3e-20 105.5 200 39.5
COL.COLO4_19477 Corchorus olitorius HOM05D005345 ORTHO05D004682 3.0e-20 104.4 135 47.4
Duzib106G0455 Durio zibethinus HOM05D005345 ORTHO05D004682 5.1e-20 103.6 221 38.0
Gohir.D13G008100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 5.1e-20 103.6 596 26.8
Gorai.013G008500 Gossypium raimondii HOM05D005345 ORTHO05D004682 5.1e-20 103.6 596 26.8
Ciclev10030619m.g Citrus clementina HOM05D005345 ORTHO05D004682 1.1e-19 102.4 273 32.6
Manes.10G003400 Manihot esculenta HOM05D005345 ORTHO05D004682 1.5e-19 102.1 122 47.5
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 1.5e-19 102.1 128 48.4
CsaV3_6G002400 Cucumis sativus L. HOM05D005345 ORTHO05D004682 1.9e-19 101.7 238 34.0
Duzib128G0800 Durio zibethinus HOM05D005345 ORTHO05D004682 2.5e-19 101.3 122 50.8
Manes.07G142000 Manihot esculenta HOM05D005345 ORTHO05D004682 2.5e-19 101.3 130 46.9
CANSAT56G0683 Cannabis sativa HOM05D005345 ORTHO05D004682 4.8e-18 97.1 133 48.1
PGR044G0353 Punica granatum HOM05D005345 ORTHO05D004682 6.3e-18 96.7 184 37.5
FAN10G1366 Fragaria x ananassa HOM05D005345 ORTHO05D004682 8.2e-18 96.3 105 43.8
Haze_17372 Corylus avellana HOM05D005345 ORTHO05D004682 1.4e-17 95.5 131 43.5
FAN01G1672 Fragaria x ananassa HOM05D005345 ORTHO05D004682 1.4e-17 95.5 105 42.9
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 1.4e-17 95.5 258 32.6
Prupe.2G265800 Prunus persica HOM05D005345 ORTHO05D004682 1.4e-17 95.5 247 32.0
FvH4_7g26160 Fragaria vesca HOM05D005345 ORTHO05D004682 5.3e-17 93.6 235 29.8
FAN06G3940 Fragaria x ananassa HOM05D005345 ORTHO05D004682 5.3e-17 93.6 235 29.8
QL08p065100 Quercus lobata HOM05D005345 ORTHO05D004682 5.3e-17 93.6 122 40.2
Cc02_g05190 Coffea canephora HOM05D005345 ORTHO05D004682 6.9e-17 93.2 211 33.6
Lj8C52G7 Lonicera japonica HOM05D005345 ORTHO05D004682 6.9e-17 93.2 123 43.1
PGSC0003DMG400022956 Solanum tuberosum HOM05D005345 ORTHO05D004682 1.2e-16 92.4 127 40.2
MELO3C020021.2 Cucumis melo HOM05D005345 ORTHO05D004682 1.5e-16 92.0 238 31.9
Migut.F00566 Erythranthe guttata HOM05D005345 ORTHO05D004682 1.5e-16 92.0 648 25.3
Sopen03g025560 Solanum pennellii HOM05D005345 ORTHO05D004682 2.0e-16 91.7 127 40.2
Eucgr.G03149 Eucalyptus grandis HOM05D005345 ORTHO05D004682 3.4e-16 90.9 153 36.6
Peaxi162Scf00073g00227 Petunia axillaris HOM05D005345 ORTHO05D004682 4.5e-16 90.5 274 29.6
Sed0004419 Sechium edule HOM05D005345 ORTHO05D004682 4.5e-16 90.5 234 30.3
Hund15794 Selenicereus undatus HOM05D005345 ORTHO05D004682 4.5e-16 90.5 204 34.8
Medtr3g093780 Medicago truncatula HOM05D005345 ORTHO05D004682 7.7e-16 89.7 77 51.9
RcHm_v2.0_Chr1g0372591 Rosa chinensis HOM05D005345 ORTHO05D004682 7.7e-16 89.7 352 25.9
arahy.Tifrunner.gnm1.ann1.0QV8DZ Arachis hypogaea HOM05D005345 ORTHO05D004682 1.0e-15 89.4 130 40.8
arahy.Tifrunner.gnm1.ann1.A39QJ2 Arachis hypogaea HOM05D005345 ORTHO05D004682 1.0e-15 89.4 130 40.8
Oeu064002.1 Olea europaea HOM05D005345 ORTHO05D004682 1.3e-15 89.0 336 28.6
Dinv21859 Davidia involucrata HOM05D005345 ORTHO05D004682 1.7e-15 88.6 98 42.9
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 1.7e-15 88.6 100 44.0
Nitab4.5_0000171g0310 Nicotiana tabacum HOM05D005345 ORTHO05D004682 1.7e-15 88.6 238 31.1
TAR369G0882 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.7e-15 88.6 77 54.5
Glyma.14G186800 Glycine max HOM05D005345 ORTHO05D004682 2.9e-15 87.8 145 39.3
Phvul.009G042600 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 2.9e-15 87.8 116 47.4
Rhsim03G0153800 Rhododendron simsii HOM05D005345 ORTHO05D004682 2.9e-15 87.8 115 42.6
MSTRG.8382 Avicennia marina HOM05D005345 ORTHO05D004682 3.8e-15 87.4 187 36.4
TPR.G33944 Trifolium pratense HOM05D005345 ORTHO05D004682 5.0e-15 87.0 131 39.7
vmacro09953 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 5.0e-15 87.0 60 60.0
Ca_16857_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 6.5e-15 86.7 132 40.9
Ca_29505_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 6.5e-15 86.7 132 40.9
Glyma.02G219400 Glycine max HOM05D005345 ORTHO05D004682 6.5e-15 86.7 265 28.7
Actinidia07784 Actinidia chinensis HOM05D005345 ORTHO05D004682 8.5e-15 86.3 121 40.5
LjContig00408g0007312 Lotus japonicus HOM05D005345 ORTHO05D004682 8.5e-15 86.3 131 43.5
Psat5g069400 Pisum sativum HOM05D005345 ORTHO05D004682 8.5e-15 86.3 88 50.0
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 8.5e-15 86.3 193 32.1
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 1.1e-14 85.9 217 33.2
DCAR_018044 Daucus carota HOM05D005345 ORTHO05D004682 1.1e-14 85.9 168 36.3
Phvul.008G186500 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 1.9e-14 85.1 120 40.0
MSTRG.27252 Avicennia marina HOM05D005345 ORTHO05D004682 3.2e-14 84.3 146 37.0
Eucgr.J00102 Eucalyptus grandis HOM05D005345 ORTHO05D004682 4.2e-14 84.0 805 24.0
MBI03_g40812_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 5.5e-14 83.6 79 51.9
Gohir.D04G011300 Gossypium hirsutum HOM05D005345 ORTHO05D004682 7.2e-14 83.2 589 26.7
Ah.11g042470 Amaranthus hybridus HOM05D005345 ORTHO05D004682 9.4e-14 82.8 371 30.7
CAN.G1229.5 Capsicum annuum HOM05D005345 ORTHO05D004682 9.4e-14 82.8 219 33.3
Nn5g26827 Nelumbo nucifera HOM05D005345 ORTHO05D004682 9.4e-14 82.8 122 38.5
ECA238G0953 Erigeron canadensis HOM05D005345 ORTHO05D004682 1.6e-13 82.0 301 30.6
DCAR_020155 Daucus carota HOM05D005345 ORTHO05D004682 2.1e-13 81.6 716 24.2
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 2.7e-13 81.3 198 35.9
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 4.6e-13 80.5 652 25.5
CSS0033913 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 6.1e-13 80.1 193 31.6
VMungo1309G1748 Vigna mungo HOM05D005345 ORTHO05D004682 6.1e-13 80.1 183 36.6
vmacro06904 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 1.4e-12 79.0 778 22.9
AUR62030590 Chenopodium quinoa HOM05D005345 ORTHO05D004682 1.8e-12 78.6 224 33.0
TPR.G13957 Trifolium pratense HOM05D005345 ORTHO05D004682 1.8e-12 78.6 88 47.7
TAR636G0005 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.8e-12 78.6 121 42.1
Lalb_Chr11g0067691 Lupinus albus HOM05D005345 ORTHO05D004682 2.3e-12 78.2 173 30.6
Aqoxy4G03281 Aquilegia oxysepala HOM05D005345 ORTHO05D004682 3.0e-12 77.8 233 30.9
Gohir.A05G404400 Gossypium hirsutum HOM05D005345 ORTHO05D004682 3.9e-12 77.4 621 27.4
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 5.1e-12 77.0 628 24.4
Gorai.012G013500 Gossypium raimondii HOM05D005345 ORTHO05D004682 5.1e-12 77.0 596 26.7
Psat2g061880 Pisum sativum HOM05D005345 ORTHO05D004682 5.1e-12 77.0 204 33.3
TWI53G1830 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 5.1e-12 77.0 229 31.0
TAR623G1626 Trochodendron aralioides HOM05D005345 ORTHO05D004682 5.1e-12 77.0 619 24.7
Actinidia13637 Actinidia chinensis HOM05D005345 ORTHO05D004682 1.5e-11 75.5 164 34.8
DCAR_009470 Daucus carota HOM05D005345 ORTHO05D004682 1.5e-11 75.5 328 27.1
Hund13436 Selenicereus undatus HOM05D005345 ORTHO05D004682 2.6e-11 74.7 221 30.8
Medtr5g068060 Medicago truncatula HOM05D005345 ORTHO05D004682 4.4e-11 73.9 200 33.0
SGA_v2.0_scaffold60G20878 Striga asiatica HOM05D005345 ORTHO05D004682 5.7e-11 73.6 715 25.0
CSS0034118 Camellia sinensis var. sinensis HOM05D002045 ORTHO05D002014 7.4e-11 73.2 539 24.7
TAR633G2169 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.3e-10 72.4 814 23.6
AUR62024949 Chenopodium quinoa HOM05D005345 ORTHO05D004682 6.3e-10 70.1 224 31.7
SGA_v2.0_scaffold44G16618 Striga asiatica HOM05D005345 ORTHO05D004682 1.8e-09 68.6 606 25.6
Atru.chr12.192 Acer truncatum HOM05D005345 ORTHO05D004682 2.4e-09 68.2 470 26.2
Lalb_Chr08g0239261 Lupinus albus HOM05D005345 ORTHO05D004682 3.1e-09 67.8 182 29.1
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 3.1e-09 67.8 608 23.7
arahy.Tifrunner.gnm1.ann1.E2ZVAX Arachis hypogaea HOM05D005345 ORTHO05D004682 6.9e-09 66.6 127 37.8
THA.LOC104814291 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 1.2e-08 65.9 211 32.2
arahy.Tifrunner.gnm1.ann1.DZPX8Q Arachis hypogaea HOM05D005345 ORTHO05D004682 2.0e-08 65.1 127 37.8
HanXRQChr07g0204951 Helianthus annuus HOM05D005345 ORTHO05D004682 2.0e-08 65.1 714 24.1
HPP92_022866 Vanilla planifolia HOM05D005345 ORTHO05D004682 3.4e-08 64.3 138 33.3
Solyc03g095610.4 Solanum lycopersicum HOM05D005345 ORTHO05D004682 4.5e-08 63.9 402 25.1
Lj1A968T60 Lonicera japonica HOM05D005345 ORTHO05D004682 1.3e-07 62.4 370 26.5
Oeu039387.1 Olea europaea HOM05D005345 ORTHO05D004682 2.9e-07 61.2 484 25.2
Lsat_1_v5_gn_2_126680 Lactuca sativa HOM05D005345 ORTHO05D004682 3.8e-07 60.8 755 23.4
SalBow3G3781 Salvia bowleyana HOM05D005345 ORTHO05D004682 3.8e-07 60.8 468 25.9
Thecc.01G346100 Theobroma cacao HOM05D002045 ORTHO05D002014 3.8e-07 60.8 564 23.9
Duzib114G0792 Durio zibethinus HOM05D005345 ORTHO05D004682 5.0e-07 60.5 163 34.4
Lsat_1_v5_gn_1_90561 Lactuca sativa HOM05D000041 ORTHO05D000452 5.0e-07 60.5 35 68.6
Actinidia31637 Actinidia chinensis HOM05D005345 ORTHO05D004682 6.5e-07 60.1 162 32.7
Dinv34499 Davidia involucrata HOM05D005345 ORTHO05D004682 6.5e-07 60.1 660 23.2
Lj8C52G6 Lonicera japonica HOM05D005345 ORTHO05D004682 8.5e-07 59.7 67 43.3
Gohir.D10G184100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.1e-06 59.3 161 31.1
AUR62010811 Chenopodium quinoa HOM05D002045 ORTHO05D002014 1.4e-06 58.9 54 50.0
Sc10g0003070 Simmondsia chinensis HOM05D005345 ORTHO05D004682 1.4e-06 58.9 494 25.7
AUR62019810 Chenopodium quinoa HOM05D002045 ORTHO05D002014 1.9e-06 58.5 53 50.9
CARHR171980 Cardamine hirsuta HOM05D002045 ORTHO05D002014 2.5e-06 58.2 571 25.6
ClCG11G005600 Citrullus lanatus HOM05D005345 ORTHO05D004682 2.5e-06 58.2 562 24.6
AL5G44070 Arabidopsis lyrata HOM05D002045 ORTHO05D002014 4.2e-06 57.4 522 23.8
arahy.Tifrunner.gnm1.ann1.WXL9J0 Arachis hypogaea HOM05D000009 ORTHO05D000008 5.5e-06 57.0 55 49.1
Gohir.A11G095600 Gossypium hirsutum HOM05D002045 ORTHO05D002014 5.5e-06 57.0 564 25.9
PGR142G1797 Punica granatum HOM05D005345 ORTHO05D004682 5.5e-06 57.0 650 24.3
TWI60G0276 Tripterygium wilfordii HOM05D002045 ORTHO05D002014 7.2e-06 56.6 72 40.3
AT4G01090 Arabidopsis thaliana HOM05D002045 ORTHO05D002014 9.4e-06 56.2 54 42.6
CARHR166540 Cardamine hirsuta HOM05D010499 ORTHO05D013671 9.4e-06 56.2 202 30.2
PSO135G1064 Papaver somniferum HOM05D002045 ORTHO05D002014 9.4e-06 56.2 627 23.4
SalBow1G3290 Salvia bowleyana HOM05D002045 ORTHO05D002014 9.4e-06 56.2 124 28.2


User provided reference genes

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