Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 4.6e-129 464.5 230 100.0
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 4.6e-129 464.5 230 100.0
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-123 446.4 230 95.2
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.3e-123 446.4 230 95.2
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 5.3e-117 424.5 230 94.3
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 5.7e-111 404.4 236 86.9
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.7e-102 375.2 246 79.3
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 4.1e-101 371.7 241 79.3
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 4.5e-100 368.2 244 79.5
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 5.0e-99 364.8 237 79.3
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 3.0e-96 355.5 239 78.2
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.3e-88 329.3 250 70.4
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 7.7e-68 261.2 239 65.7
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.5e-47 193.7 238 47.1
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 2.2e-46 189.9 216 49.1
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.4e-46 188.3 213 51.2
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.1e-45 187.6 200 51.5
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.4e-45 187.2 240 47.9
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.4e-45 187.2 223 51.1
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.2e-44 184.1 166 59.0
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 2.1e-44 183.3 234 48.3
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.1e-44 183.3 234 48.3
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 4.6e-44 182.2 182 51.6
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 4.6e-44 182.2 211 48.8
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 1.0e-43 181.0 230 48.7
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.0e-43 181.0 235 47.2
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 1.7e-43 180.3 200 50.0
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 6.6e-43 178.3 206 49.0
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 6.6e-43 178.3 206 49.0
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.1e-42 177.6 168 55.4
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.1e-42 177.6 216 50.0
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.1e-42 177.6 200 50.5
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 2.5e-42 176.4 238 44.5
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.3e-42 176.0 225 48.0
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 5.6e-42 175.3 204 48.0
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 5.6e-42 175.3 211 48.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.2e-41 174.1 213 49.8
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 2.1e-41 173.3 194 51.5
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.8e-41 172.9 192 51.0
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 3.6e-41 172.6 193 50.3
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 4.7e-41 172.2 210 48.1
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 6.2e-41 171.8 194 50.5
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 6.2e-41 171.8 165 55.2
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 6.2e-41 171.8 194 50.5
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 6.2e-41 171.8 165 55.2
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 6.2e-41 171.8 204 50.0
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 1.8e-40 170.2 216 45.8
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 3.1e-40 169.5 230 45.2
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 5.2e-40 168.7 212 46.7
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 6.8e-40 168.3 163 52.8
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.5e-39 167.2 216 44.0
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 1.5e-39 167.2 172 55.2
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 3.4e-39 166.0 163 52.1
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.4e-39 166.0 169 50.9
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 5.8e-39 165.2 198 49.0
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 5.8e-39 165.2 249 43.4
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 7.5e-39 164.9 163 53.4
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.9e-39 164.5 164 53.7
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.3e-38 164.1 204 49.5
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.3e-38 164.1 209 45.9
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.7e-38 163.7 163 54.0
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.2e-38 163.3 172 47.1
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.9e-38 162.9 165 51.5
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 2.9e-38 162.9 207 47.3
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 2.9e-38 162.9 160 55.6
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 4.9e-38 162.2 191 50.3
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.9e-38 162.2 216 44.0
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 4.9e-38 162.2 202 47.0
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 4.9e-38 162.2 155 55.5
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 6.4e-38 161.8 209 44.5
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 6.4e-38 161.8 154 51.3
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 1.1e-37 161.0 162 49.4
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.9e-37 160.2 219 42.9
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.9e-37 160.2 237 44.3
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.9e-37 160.2 192 45.8
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 3.2e-37 159.5 147 55.8
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 4.1e-37 159.1 223 43.0
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 5.4e-37 158.7 212 45.3
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 5.4e-37 158.7 205 45.9
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 7.1e-37 158.3 160 48.8
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 9.2e-37 157.9 195 46.7
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 2.7e-36 156.4 209 43.1
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 6.0e-36 155.2 156 53.8
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 7.8e-36 154.8 191 47.1
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 7.8e-36 154.8 167 50.3
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.3e-35 154.1 176 49.4
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-35 154.1 176 49.4
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.7e-35 153.7 190 44.2
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 2.3e-35 153.3 160 49.4
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 3.0e-35 152.9 152 52.0
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 3.0e-35 152.9 160 49.4
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 3.0e-35 152.9 204 43.1
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 5.6e-34 148.7 226 39.8
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 7.3e-34 148.3 188 46.8
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 9.5e-34 147.9 189 47.6
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 9.5e-34 147.9 147 49.0
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.2e-33 147.5 196 42.3
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.1e-33 146.7 180 47.8
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 8.1e-33 144.8 201 40.3
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.1e-32 144.4 168 41.7
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.1e-32 144.4 215 42.8
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.1e-32 144.4 180 47.2
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 2.4e-32 143.3 158 48.1
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.1e-32 142.9 176 46.0
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 5.2e-32 142.1 177 45.2
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 2.2e-30 136.7 211 38.4
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 2.9e-30 136.3 146 47.9
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.4e-29 134.0 214 41.6
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.4e-29 134.0 153 45.1
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.7e-28 129.8 214 36.4
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 1.0e-27 127.9 187 41.2
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 2.3e-27 126.7 150 46.0
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 2.3e-27 126.7 209 37.8
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.0e-27 126.3 162 39.5
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 3.9e-27 125.9 185 40.0
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 6.6e-27 125.2 166 43.4
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 8.7e-27 124.8 214 38.3
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.1e-26 124.4 165 44.2
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 1.5e-26 124.0 174 39.7
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.9e-26 123.6 153 48.4
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.9e-26 123.6 249 36.5
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 3.3e-26 122.9 172 41.9
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 7.3e-26 121.7 186 40.9
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 9.6e-26 121.3 155 44.5
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.6e-25 120.6 162 42.6
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 2.1e-25 120.2 169 42.0
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 4.8e-25 119.0 171 39.8
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.8e-25 119.0 124 49.2
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 4.8e-25 119.0 162 41.4
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 4.8e-25 119.0 217 37.3
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 6.2e-25 118.6 256 34.8
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 1.4e-24 117.5 163 42.9
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.8e-24 117.1 175 43.4
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.4e-24 116.7 124 48.4
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.4e-24 116.7 124 48.4
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 3.1e-24 116.3 150 42.0
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.0e-24 115.9 186 36.0
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.0e-24 115.9 186 36.0
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 4.0e-24 115.9 143 43.4
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 5.3e-24 115.5 201 37.3
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.2e-23 114.4 117 51.3
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 5.8e-23 112.1 181 38.1
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 2.2e-22 110.2 151 43.7
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.9e-22 109.8 161 37.9
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.1e-21 107.8 132 47.7
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.5e-20 102.8 166 37.3
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 3.5e-20 102.8 178 34.8
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.7e-19 100.5 165 38.8
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 2.5e-18 96.7 186 38.7
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.8e-16 90.5 169 31.4
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 5.3e-16 89.0 183 33.3
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 4.5e-15 85.9 204 32.4
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 5.8e-15 85.5 63 61.9
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 7.6e-15 85.1 183 32.8
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 9.9e-15 84.7 144 40.3
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.3e-14 84.3 166 33.7
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.1e-13 81.3 101 44.6
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.4e-13 79.0 167 30.5
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.6e-12 77.4 75 54.7
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.8e-11 73.9 78 46.2
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 4.3e-10 69.3 107 39.3
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 2.8e-09 66.6 93 36.6
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 3.7e-09 66.2 84 42.9
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 6.2e-09 65.5 147 31.3
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 6.4e-06 55.5 92 39.1


User provided reference genes

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