Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 0.0e+00 1165.6 594 100.0
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 0.0e+00 1151.7 592 99.2
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 6.8e-310 1066.6 594 93.6
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.6e-306 1055.4 599 91.5
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 3.4e-301 1037.7 637 86.0
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.5e-269 932.6 641 78.3
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 9.4e-259 896.7 635 75.9
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.1e-258 894.0 625 76.5
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.7e-231 805.1 595 72.6
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 5.6e-227 791.2 627 68.7
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 8.0e-218 760.8 573 72.1
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 2.3e-217 759.2 640 63.3
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.4e-209 733.4 617 65.0
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 2.7e-205 719.2 615 64.4
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.1e-201 705.7 618 62.5
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 1.4e-198 696.8 602 62.6
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 1.4e-198 696.8 602 62.6
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.6e-197 693.3 606 62.5
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.6e-197 693.3 606 62.5
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 2.7e-197 692.6 606 62.5
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.2e-194 683.7 611 61.4
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 2.4e-193 679.5 606 61.7
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 4.8e-186 655.2 667 55.0
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 4.3e-171 605.5 626 52.9
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 7.4e-171 604.7 641 52.7
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 8.1e-170 601.3 644 51.6
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.8e-169 600.1 647 51.0
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.4e-169 599.7 619 52.0
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 5.3e-169 598.6 632 51.3
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.0e-167 594.3 638 53.3
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.3e-167 594.0 628 50.8
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.3e-167 594.0 638 52.2
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 1.3e-167 594.0 638 52.4
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.3e-167 594.0 640 50.9
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 2.9e-167 592.8 636 51.3
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 3.8e-167 592.4 641 52.3
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 4.9e-167 592.0 609 53.7
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.1e-166 590.9 645 51.2
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 3.2e-166 589.3 626 51.4
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 5.5e-166 588.6 636 51.7
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 5.5e-166 588.6 637 51.2
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 7.1e-166 588.2 611 52.2
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.2e-165 587.4 631 53.6
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.7e-165 586.3 646 51.4
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.5e-165 585.9 588 52.0
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 4.6e-165 585.5 637 51.0
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 7.9e-165 584.7 624 52.4
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 2.3e-164 583.2 643 50.4
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 6.7e-164 581.6 657 51.6
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.1e-163 580.9 637 50.9
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.5e-163 580.5 599 52.8
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.5e-163 580.5 619 52.8
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.5e-163 580.5 631 52.6
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.9e-163 580.1 632 51.9
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.3e-163 579.3 621 50.7
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 3.3e-163 579.3 641 49.3
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 7.4e-163 578.2 609 51.2
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.3e-162 577.4 642 49.2
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.6e-162 577.0 641 50.2
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.1e-161 574.3 606 52.3
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.8e-161 573.5 606 52.3
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.1e-161 572.4 649 51.8
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 5.3e-161 572.0 630 51.4
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 5.3e-161 572.0 619 50.4
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 6.9e-161 571.6 637 51.5
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 1.2e-160 570.9 640 50.0
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.5e-160 570.5 675 47.3
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 3.4e-160 569.3 612 51.5
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 5.9e-160 568.5 632 51.3
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 2.9e-159 566.2 642 51.2
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 6.5e-159 565.1 625 50.9
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 8.5e-159 564.7 679 48.2
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.4e-158 563.9 621 51.5
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.9e-158 563.5 641 49.6
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.9e-158 563.5 653 51.0
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 3.2e-158 562.8 588 51.4
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.6e-157 560.5 623 50.2
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 2.7e-157 559.7 631 49.3
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 3.9e-156 555.8 653 48.4
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 3.9e-156 555.8 388 76.3
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.1e-156 555.4 586 51.0
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 3.3e-155 552.7 648 49.1
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 9.7e-155 551.2 653 48.2
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.3e-154 550.8 623 49.6
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 2.8e-154 549.7 640 49.8
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 8.2e-154 548.1 639 50.1
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.4e-153 547.4 628 48.7
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.7e-151 540.4 625 49.6
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 1.4e-150 537.3 577 53.0
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 5.5e-150 535.4 624 49.5
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 7.2e-150 535.0 624 48.6
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 9.4e-150 534.6 620 49.2
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.2e-149 534.3 648 48.0
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 3.0e-148 529.6 657 47.6
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 3.3e-147 526.2 647 47.6
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 4.4e-147 525.8 631 47.9
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 7.4e-147 525.0 526 53.8
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 4.8e-146 522.3 625 47.0
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.4e-145 520.0 454 63.9
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 5.3e-145 518.8 603 49.4
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.5e-144 517.3 629 46.7
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 3.4e-144 516.2 502 55.4
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 1.9e-142 510.4 561 50.8
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.5e-142 510.0 562 49.8
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 3.2e-142 509.6 582 49.7
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.8e-140 503.8 644 44.9
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.3e-140 503.4 691 43.7
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 5.2e-140 502.3 541 50.1
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 3.3e-139 499.6 590 48.0
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.3e-139 499.6 567 50.3
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 5.7e-139 498.8 571 51.0
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 2.8e-138 496.5 591 48.4
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 6.3e-138 495.4 473 56.7
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.4e-137 493.4 582 49.1
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.5e-134 484.2 505 51.5
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 4.2e-134 482.6 524 51.1
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 4.0e-132 476.1 497 52.9
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 5.2e-132 475.7 628 47.8
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 4.4e-131 472.6 637 44.6
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.8e-130 469.9 611 47.0
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 1.1e-129 468.0 491 51.5
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 2.0e-128 463.8 599 47.2
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.5e-126 456.8 614 44.0
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.7e-125 453.4 515 49.3
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.2e-123 448.0 498 50.6
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 4.1e-113 412.9 489 48.5
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 9.2e-113 411.8 635 40.9
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 2.0e-112 410.6 456 50.0
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.9e-111 406.8 427 52.7
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 3.6e-109 399.8 619 42.2
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.7e-109 399.4 476 45.2
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.7e-109 399.4 476 45.2
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 2.2e-106 390.6 631 39.6
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.4e-105 387.9 493 46.5
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.5e-99 367.9 517 43.5
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.1e-86 325.1 616 37.2
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 5.8e-83 312.8 629 37.7
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 9.9e-75 285.4 656 32.8
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 3.5e-72 276.9 503 36.2
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 3.5e-56 223.8 315 43.5
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 2.5e-54 217.6 401 33.9
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.3e-50 205.3 350 38.0
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 2.2e-42 177.9 200 45.0
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 2.5e-38 164.5 120 66.7
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 3.2e-25 120.9 186 37.1
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 4.8e-21 107.1 64 73.4
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.6e-16 92.0 155 40.6
CARHR207570 Cardamine hirsuta HOM05D004604 ORTHO05D116251 2.5e-09 68.2 69 53.6
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-07 61.6 83 39.8


User provided reference genes

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