Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p35190 Brassica napus HOM05D003439 ORTHO05D004062 5.5e-53 210.7 105 100.0
C09p70480 Brassica napus HOM05D003439 ORTHO05D004062 5.5e-53 210.7 105 100.0
BraA08t35428Z Brassica rapa HOM05D003439 ORTHO05D004062 5.5e-53 210.7 105 100.0
BolC8t51791H Brassica oleracea HOM05D003439 ORTHO05D004062 5.0e-46 187.6 118 84.7
BcaC07g41226 Brassica carinata HOM05D003439 ORTHO05D004062 2.8e-41 171.8 106 85.8
C08p01780 Brassica napus HOM05D003439 ORTHO05D004062 3.4e-39 164.9 87 94.3
BolC8t46978H Brassica oleracea HOM05D003439 ORTHO05D004062 3.4e-39 164.9 87 94.3
Thhalv10007362m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 1.7e-38 162.5 87 93.1
Sp1g04030 Schrenkiella parvula HOM05D003439 ORTHO05D004062 1.7e-38 162.5 87 93.1
SpUn0024_0110 Schrenkiella parvula HOM05D003439 ORTHO05D004062 1.7e-38 162.5 87 93.1
BcaNung05930 Brassica carinata HOM05D003439 ORTHO05D004062 2.2e-38 162.2 87 93.1
C08p42310 Brassica napus HOM05D003439 ORTHO05D004062 2.2e-38 162.2 102 84.3
Aa31LG1G19570 Aethionema arabicum HOM05D003439 ORTHO05D004062 2.9e-38 161.8 87 93.1
BcaC07g36858 Brassica carinata HOM05D003439 ORTHO05D004062 2.9e-38 161.8 87 92.0
C05p03410 Brassica napus HOM05D003439 ORTHO05D004062 2.9e-38 161.8 87 93.1
BolC5t29120H Brassica oleracea HOM05D003439 ORTHO05D004062 2.9e-38 161.8 87 93.1
A08p36540 Brassica napus HOM05D003439 ORTHO05D004062 8.5e-38 160.2 87 92.0
BraA10t42644Z Brassica rapa HOM05D003439 ORTHO05D004062 1.1e-37 159.8 87 92.0
A10p03710 Brassica napus HOM05D003439 ORTHO05D004062 3.2e-37 158.3 87 90.8
BraA08t35555Z Brassica rapa HOM05D003439 ORTHO05D004062 3.2e-37 158.3 87 89.7
BraA01t03614Z Brassica rapa HOM05D003439 ORTHO05D004062 5.5e-37 157.5 102 84.3
Carub.0001s0445 Capsella rubella HOM05D003439 ORTHO05D004062 9.4e-37 156.8 87 87.4
BolC8t48703H Brassica oleracea HOM05D003439 ORTHO05D004062 1.6e-36 156.0 98 86.7
AL1G14940 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 3.6e-36 154.8 87 88.5
BraA09t42091Z Brassica rapa HOM05D003439 ORTHO05D004062 4.7e-36 154.5 87 88.5
AT1G05180 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 7.9e-36 153.7 87 87.4
BcaC02g11324 Brassica carinata HOM05D003439 ORTHO05D004062 1.8e-35 152.5 87 83.9
Thhalv10016512m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 1.8e-35 152.5 87 85.1
C04p17240 Brassica napus HOM05D003439 ORTHO05D004062 2.3e-35 152.1 87 83.9
BolC4t23276H Brassica oleracea HOM05D003439 ORTHO05D004062 2.3e-35 152.1 87 83.9
BolC8t52726H Brassica oleracea HOM05D003439 ORTHO05D004062 2.3e-35 152.1 87 86.2
BcaC07g42149 Brassica carinata HOM05D003439 ORTHO05D004062 3.0e-35 151.8 85 87.1
C08p51960 Brassica napus HOM05D003439 ORTHO05D004062 3.0e-35 151.8 85 87.1
BcaB02g10470 Brassica carinata HOM05D003439 ORTHO05D004062 5.1e-35 151.0 87 82.8
A05p13180 Brassica napus HOM05D003439 ORTHO05D004062 5.1e-35 151.0 87 81.6
CSS0047283 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 8.8e-35 150.2 90 80.0
CARHR004640 Cardamine hirsuta HOM05D003439 ORTHO05D004062 1.1e-34 149.8 87 86.2
Manes.12G066600 Manihot esculenta HOM05D003439 ORTHO05D004062 1.1e-34 149.8 87 81.6
Sp4g14780 Schrenkiella parvula HOM05D003439 ORTHO05D004062 1.1e-34 149.8 87 81.6
CANSAT64G1323 Cannabis sativa HOM05D003439 ORTHO05D004062 1.5e-34 149.4 87 82.8
CSS0041453 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 2.0e-34 149.1 87 82.8
THA.LOC104816043 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 2.0e-34 149.1 87 80.5
Carub.0004s1376 Capsella rubella HOM05D003439 ORTHO05D004062 2.6e-34 148.7 87 80.5
FvH4_6g43170 Fragaria vesca HOM05D003439 ORTHO05D004062 2.6e-34 148.7 87 81.6
FAN14G2769 Fragaria x ananassa HOM05D003439 ORTHO05D004062 2.6e-34 148.7 87 81.6
Peaxi162Scf00389g00814 Petunia axillaris HOM05D003439 ORTHO05D004062 3.3e-34 148.3 87 82.8
Glyma.06G305800 Glycine max HOM05D003439 ORTHO05D004062 4.4e-34 147.9 87 79.3
Solyc12g005870.3 Solanum lycopersicum HOM05D003439 ORTHO05D004062 4.4e-34 147.9 87 81.6
Sopen12g001820 Solanum pennellii HOM05D003439 ORTHO05D004062 4.4e-34 147.9 87 81.6
COL.COLO4_27713 Corchorus olitorius HOM05D003439 ORTHO05D004062 5.7e-34 147.5 87 80.5
Cpa.g.sc87.77 Carica papaya HOM05D003439 ORTHO05D004062 7.4e-34 147.1 87 79.3
FAN09G3949 Fragaria x ananassa HOM05D003439 ORTHO05D004062 7.4e-34 147.1 87 79.3
Nitab4.5_0001213g0070 Nicotiana tabacum HOM05D003439 ORTHO05D004062 7.4e-34 147.1 87 81.6
Solyc11g072460.2 Solanum lycopersicum HOM05D003439 ORTHO05D004062 9.7e-34 146.7 87 80.5
Sopen11g030100 Solanum pennellii HOM05D003439 ORTHO05D004062 9.7e-34 146.7 87 80.5
Nitab4.5_0006567g0010 Nicotiana tabacum HOM05D003439 ORTHO05D004062 1.3e-33 146.4 87 82.8
BraA05t20259Z Brassica rapa HOM05D003439 ORTHO05D004062 1.7e-33 146.0 87 79.3
CAN.G80.46 Capsicum annuum HOM05D003439 ORTHO05D004062 1.7e-33 146.0 87 81.6
PGR042G0375 Punica granatum HOM05D003439 ORTHO05D004062 1.7e-33 146.0 87 79.3
TWI36G1050 Tripterygium wilfordii HOM05D003439 ORTHO05D004062 1.7e-33 146.0 87 79.3
Atru.chr6.3185 Acer truncatum HOM05D003439 ORTHO05D004062 2.2e-33 145.6 87 78.2
HanXRQChr05g0144141 Helianthus annuus HOM05D003439 ORTHO05D004062 2.2e-33 145.6 87 80.5
QL08p033044 Quercus lobata HOM05D003439 ORTHO05D004062 2.2e-33 145.6 87 79.3
RcHm_v2.0_Chr2g0159271 Rosa chinensis HOM05D003439 ORTHO05D004062 2.2e-33 145.6 87 78.2
TPR.G4641 Trifolium pratense HOM05D003439 ORTHO05D004062 2.2e-33 145.6 87 79.3
ECA232G2998 Erigeron canadensis HOM05D003439 ORTHO05D004062 2.8e-33 145.2 87 81.6
Eucgr.A01128 Eucalyptus grandis HOM05D003439 ORTHO05D004062 2.8e-33 145.2 87 80.5
Thecc.02G314800 Theobroma cacao HOM05D003439 ORTHO05D004062 2.8e-33 145.2 87 79.3
GSVIVG01030423001 Vitis vinifera HOM05D003439 ORTHO05D004062 2.8e-33 145.2 87 79.3
Cc05_g04590 Coffea canephora HOM05D003439 ORTHO05D004062 3.7e-33 144.8 87 79.3
DCAR_019274 Daucus carota HOM05D003439 ORTHO05D004062 3.7e-33 144.8 87 79.3
Lalb_Chr19g0135881 Lupinus albus HOM05D003439 ORTHO05D004062 3.7e-33 144.8 87 77.0
PGSC0003DMG400027403 Solanum tuberosum HOM05D003439 ORTHO05D004062 3.7e-33 144.8 87 79.3
AL4G27800 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 4.8e-33 144.4 87 80.5
AT2G32410 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 4.8e-33 144.4 87 81.6
AUR62032477 Chenopodium quinoa HOM05D003439 ORTHO05D004062 4.8e-33 144.4 87 80.5
FAN05G3766 Fragaria x ananassa HOM05D003439 ORTHO05D004062 6.3e-33 144.1 87 78.2
Gohir.A03G108400 Gossypium hirsutum HOM05D003439 ORTHO05D004062 6.3e-33 144.1 87 78.2
MSTRG.6579 Avicennia marina HOM05D003439 ORTHO05D004062 8.2e-33 143.7 87 80.5
Lsat_1_v5_gn_9_43200 Lactuca sativa HOM05D003439 ORTHO05D004062 8.2e-33 143.7 87 80.5
Prupe.3G217100 Prunus persica HOM05D003439 ORTHO05D004062 8.2e-33 143.7 87 79.3
VMungo1127G2094 Vigna mungo HOM05D003439 ORTHO05D004062 8.2e-33 143.7 87 78.2
arahy.Tifrunner.gnm1.ann1.N0VMF0 Arachis hypogaea HOM05D003439 ORTHO05D004062 1.1e-32 143.3 87 78.2
arahy.Tifrunner.gnm1.ann1.S34EA0 Arachis hypogaea HOM05D003439 ORTHO05D004062 1.1e-32 143.3 87 78.2
Duzib251G0240 Durio zibethinus HOM05D003439 ORTHO05D004062 1.1e-32 143.3 87 79.3
SalBow7G1393 Salvia bowleyana HOM05D003439 ORTHO05D004062 1.1e-32 143.3 87 79.3
Lj3g0022714 Lotus japonicus HOM05D003439 ORTHO05D004062 1.4e-32 142.9 87 77.0
Medtr4g048220 Medicago truncatula HOM05D003439 ORTHO05D004062 1.4e-32 142.9 87 78.2
A09p67580 Brassica napus HOM05D003439 ORTHO05D004062 1.8e-32 142.5 87 83.9
CARHR126230 Cardamine hirsuta HOM05D003439 ORTHO05D004062 1.8e-32 142.5 87 80.5
CiPaw.03G159900 Carya illinoinensis HOM05D003439 ORTHO05D004062 1.8e-32 142.5 87 79.3
Dinv39712 Davidia involucrata HOM05D003439 ORTHO05D004062 1.8e-32 142.5 87 78.2
Lj1C765G0 Lonicera japonica HOM05D003439 ORTHO05D004062 1.8e-32 142.5 87 77.0
Glyma.12G098800 Glycine max HOM05D003439 ORTHO05D004062 2.4e-32 142.1 87 74.7
Gohir.D02G133600 Gossypium hirsutum HOM05D003439 ORTHO05D004062 2.4e-32 142.1 87 77.0
Gorai.005G149600 Gossypium raimondii HOM05D003439 ORTHO05D004062 2.4e-32 142.1 87 77.0
THA.LOC104800990 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 2.4e-32 142.1 87 78.2
Phvul.011G103600 Phaseolus vulgaris HOM05D003439 ORTHO05D004062 3.1e-32 141.7 87 77.0
EL10Ac8g19506 Beta vulgaris HOM05D003439 ORTHO05D004062 4.1e-32 141.4 87 78.2
CAN.G553.19 Capsicum annuum HOM05D003439 ORTHO05D004062 5.3e-32 141.0 87 78.2
Duzib248G0706 Durio zibethinus HOM05D003439 ORTHO05D004062 5.3e-32 141.0 87 77.0
MD17G1097000 Malus domestica HOM05D003439 ORTHO05D004062 5.3e-32 141.0 87 78.2
Nn1g07136 Nelumbo nucifera HOM05D003439 ORTHO05D004062 5.3e-32 141.0 87 75.9
Cfa014399 Carpinus fangiana HOM05D003439 ORTHO05D004062 7.0e-32 140.6 87 75.9
AUR62043065 Chenopodium quinoa HOM05D003439 ORTHO05D004062 7.0e-32 140.6 87 78.2
Migut.M00436 Erythranthe guttata HOM05D003439 ORTHO05D004062 7.0e-32 140.6 87 77.0
MD09G1109000 Malus domestica HOM05D003439 ORTHO05D004062 7.0e-32 140.6 87 77.0
Psat7g157240 Pisum sativum HOM05D003439 ORTHO05D004062 7.0e-32 140.6 87 75.9
Sabra14G0116100 Salix brachista HOM05D003439 ORTHO05D004062 9.1e-32 140.2 87 74.7
SGA_v2.0_scaffold34G13839 Striga asiatica HOM05D003439 ORTHO05D004062 1.6e-31 139.4 87 74.7
TAR627G1083 Trochodendron aralioides HOM05D003439 ORTHO05D004062 1.6e-31 139.4 87 74.7
Ciclev10014908m.g Citrus clementina HOM05D003439 ORTHO05D004062 2.0e-31 139.0 87 74.7
Ca_26960_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 2.6e-31 138.7 87 74.7
Aqoxy1G02139 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 3.5e-31 138.3 87 74.7
Potri.014G153500 Populus trichocarpa HOM05D003439 ORTHO05D004062 3.5e-31 138.3 87 74.7
TAR629G2369 Trochodendron aralioides HOM05D003439 ORTHO05D004062 4.5e-31 137.9 87 75.9
Sabra02G0175100 Salix brachista HOM05D003439 ORTHO05D004062 5.9e-31 137.5 87 74.7
Potri.002G229100 Populus trichocarpa HOM05D003439 ORTHO05D004062 7.7e-31 137.1 87 74.7
MELO3C019269.2 Cucumis melo HOM05D003439 ORTHO05D004062 1.7e-30 136.0 87 74.7
CsaV3_2G034930 Cucumis sativus L. HOM05D003439 ORTHO05D004062 2.9e-30 135.2 87 74.7
PSO675G5573 Papaver somniferum HOM05D003439 ORTHO05D004062 2.9e-30 135.2 87 73.6
Sc21g0001430 Simmondsia chinensis HOM05D003439 ORTHO05D004062 2.9e-30 135.2 87 71.3
Aqoxy2G04140 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 3.8e-30 134.8 87 72.4
CDE11G0886 Ceratophyllum demersum HOM05D003439 ORTHO05D004062 8.5e-30 133.7 87 70.1
Manes.12G074303 Manihot esculenta HOM05D003439 ORTHO05D004062 8.5e-30 133.7 83 79.5
Sed0026537 Sechium edule HOM05D003439 ORTHO05D004062 8.5e-30 133.7 87 73.6
ATR0794G065 Amborella trichopoda HOM05D003439 ORTHO05D004062 1.1e-29 133.3 87 67.8
SHI10354 Sapria himalayana HOM05D003439 ORTHO05D004062 1.1e-29 133.3 87 72.4
PSO541G1862 Papaver somniferum HOM05D003439 ORTHO05D004062 1.5e-29 132.9 87 72.4
Os03g0820100 Oryza sativa ssp. japonica HOM05D003439 ORTHO05D004062 3.6e-28 128.3 87 71.3
Hund02156 Selenicereus undatus HOM05D003439 ORTHO05D004062 4.7e-28 127.9 119 58.0
Zm00001eb211770 Zea mays HOM05D003439 ORTHO05D004062 8.0e-28 127.1 87 71.3
SEGI_36291 Sequoiadendron giganteum HOM05D003439 ORTHO05D004062 1.0e-27 126.7 87 64.4
Zm00001eb062550 Zea mays HOM05D003439 ORTHO05D004062 1.0e-27 126.7 87 71.3
C08p10240 Brassica napus HOM05D003439 ORTHO05D004062 4.0e-27 124.8 73 87.7
HPP92_015981 Vanilla planifolia HOM05D003439 ORTHO05D004062 5.2e-27 124.4 87 64.4
Haze_12863 Corylus avellana HOM05D003439 ORTHO05D004062 2.6e-26 122.1 124 53.2
ClCG02G008740 Citrullus lanatus HOM05D003439 ORTHO05D004062 7.5e-26 120.6 114 57.0
SGA_v2.0_scaffold70G23396 Striga asiatica HOM05D003439 ORTHO05D004062 1.7e-25 119.4 103 61.2
Pp3c2_11270 Physcomitrium patens HOM05D003439 ORTHO05D004062 8.2e-25 117.1 87 62.1
BcaC07g38277 Brassica carinata HOM05D003439 ORTHO05D004062 1.1e-24 116.7 69 85.5
Mapoly0005s0094 Marchantia polymorpha HOM05D003439 ORTHO05D004062 9.1e-24 113.6 88 61.4
vmacro12203 Vaccinium macrocarpon HOM05D003439 ORTHO05D004062 1.6e-23 112.8 71 77.5
Pp3c14_7440 Physcomitrium patens HOM05D003439 ORTHO05D004062 5.9e-23 110.9 87 58.6
CBR_g55862 Chara braunii HOM05D003439 ORTHO05D004062 6.5e-22 107.5 87 56.3
CDE05G2607 Ceratophyllum demersum HOM05D003439 ORTHO05D004062 1.9e-21 105.9 107 54.2
AagrBONN_evm.TU.Sc2ySwM_228.3702 Anthoceros agrestis HOM05D003439 ORTHO05D004062 7.2e-21 104.0 87 50.6
CBR_g50442 Chara braunii HOM05D003439 ORTHO05D004062 9.4e-21 103.6 87 54.0
BolC3t21144H Brassica oleracea HOM05D003439 ORTHO05D004062 3.0e-19 98.6 55 87.3
Oeu041919.3 Olea europaea HOM05D003439 ORTHO05D004062 4.0e-19 98.2 54 81.5
SMO140G0107 Selaginella moellendorffii HOM05D003439 ORTHO05D004062 2.6e-18 95.5 87 51.7
Psat1g032320 Pisum sativum HOM05D003439 ORTHO05D004062 2.2e-17 92.4 86 59.3
PRCOL_00002650 Prasinoderma coloniale HOM05D003439 ORTHO05D004062 2.8e-17 92.0 87 50.6
Hma1.2p1_0576F.1_g182010 Hydrangea macrophylla HOM05D003439 ORTHO05D004062 4.8e-17 91.3 60 68.3
Cre01.g002350 Chlamydomonas reinhardtii HOM05D003439 ORTHO05D004062 8.3e-17 90.5 88 52.3
Hma1.2p1_0032F.1_g018780 Hydrangea macrophylla HOM05D003439 ORTHO05D007904 4.1e-16 88.2 60 68.3
MBI02_g21885_MAGBIO Magnolia biondii HOM05D003439 ORTHO05D004062 4.1e-16 88.2 55 69.1
Ca_29946_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 2.0e-15 85.9 49 75.5
RcHm_v2.0_Chr6g0280031 Rosa chinensis HOM05D003439 ORTHO05D004062 1.0e-14 83.6 49 75.5
Sed0015779 Sechium edule HOM05D003439 ORTHO05D004062 2.2e-14 82.4 48 75.0
Psat0s800g0080 Pisum sativum HOM05D003439 ORTHO05D004062 1.5e-13 79.7 49 73.5
MCO01G723 Micromonas commoda HOM05D003439 ORTHO05D004062 9.5e-13 77.0 85 37.6
FAN02G4351 Fragaria x ananassa HOM05D003439 ORTHO05D004062 3.4e-10 68.6 87 44.8
Actinidia27265 Actinidia chinensis HOM05D003439 ORTHO05D004062 7.5e-10 67.4 87 46.0
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 1.4e-08 63.2 41 70.7


User provided reference genes

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