Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1735.3 879 100.0
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 0.0e+00 1707.2 879 98.4
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1700.6 879 98.0
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 0.0e+00 1684.5 877 97.4
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1681.4 877 97.5
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1558.9 878 90.5
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 0.0e+00 1464.1 880 84.3
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 0.0e+00 1387.9 881 80.1
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 0.0e+00 1345.5 881 77.9
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1303.9 881 75.8
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 0.0e+00 1290.4 880 74.3
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1228.8 877 72.5
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 0.0e+00 1218.4 902 70.3
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1184.1 882 70.9
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1080.1 890 67.1
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 6.0e-312 1073.9 875 63.0
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 6.7e-253 877.9 908 57.4
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 2.6e-241 839.3 884 51.6
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.1e-239 833.9 890 51.3
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.6e-238 828.6 563 75.7
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.2e-233 813.9 883 49.7
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 7.7e-233 811.2 884 49.2
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.5e-231 805.1 881 49.1
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 5.5e-231 805.1 881 49.1
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.5e-228 797.0 885 49.4
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 3.7e-227 792.3 882 48.8
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.4e-226 790.4 887 49.5
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.7e-222 776.2 895 47.5
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 2.0e-220 770.0 886 47.7
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.6e-220 769.6 883 48.4
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.3e-219 765.0 927 46.1
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 7.0e-218 761.5 886 47.3
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 2.0e-217 760.0 854 49.2
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.5e-217 759.2 886 46.8
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.0e-216 757.7 881 47.1
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.3e-216 757.3 894 47.2
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.5e-215 753.8 886 46.6
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.2e-215 752.3 886 46.5
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 4.2e-215 752.3 891 47.5
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 4.7e-214 748.8 885 46.6
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 4.7e-214 748.8 876 47.5
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 6.1e-214 748.4 886 47.1
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.2e-213 745.3 884 46.8
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 5.2e-213 745.3 888 47.1
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.2e-212 744.2 747 53.0
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 2.6e-212 743.0 887 46.9
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.4e-212 742.3 884 46.7
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.4e-210 736.5 888 45.6
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 2.0e-209 733.4 889 45.6
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.0e-208 731.1 889 45.3
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.2e-208 729.9 893 45.6
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 6.5e-208 728.4 896 45.4
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 4.0e-205 719.2 884 47.5
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 4.0e-205 719.2 889 46.3
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 8.8e-205 718.0 868 45.2
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.8e-202 710.3 887 46.0
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 5.4e-202 708.8 887 45.8
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.6e-201 707.2 885 46.1
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.0e-201 706.8 754 50.4
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 5.9e-201 705.3 888 45.6
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.7e-200 703.7 899 44.7
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 6.1e-198 695.3 838 45.1
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 4.0e-197 692.6 891 44.2
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 2.6e-196 689.9 908 44.4
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 5.4e-194 682.2 938 44.2
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 2.0e-193 680.2 892 43.4
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.3e-192 677.6 894 43.6
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 8.6e-192 674.9 877 42.2
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.5e-191 674.1 872 45.3
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.9e-191 673.7 888 42.2
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 9.5e-191 671.4 883 44.7
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.6e-190 670.6 888 44.0
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.6e-190 670.6 883 42.9
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 8.0e-190 668.3 890 41.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 3.1e-189 666.4 889 43.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 4.0e-189 666.0 857 45.9
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 4.4e-188 662.5 950 41.4
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 8.3e-187 658.3 887 42.7
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.3e-181 640.2 873 42.7
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 9.8e-180 634.8 893 40.2
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 4.6e-177 625.9 953 40.0
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.6e-174 616.3 888 40.4
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 3.6e-174 616.3 891 41.3
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 8.9e-173 611.7 899 39.7
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 2.2e-171 607.1 731 46.5
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.9e-170 604.0 893 41.1
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 5.4e-170 602.4 888 41.4
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 7.1e-170 602.1 864 41.9
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.0e-168 596.7 651 49.8
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 5.1e-168 595.9 912 38.8
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 8.6e-168 595.1 893 40.8
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 4.7e-166 589.3 830 41.1
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 4.4e-164 582.8 736 43.6
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.7e-163 580.9 893 38.9
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.9e-162 577.4 703 45.2
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 3.9e-160 569.7 802 40.9
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 2.1e-158 563.9 702 45.7
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 2.0e-156 557.4 893 39.9
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.7e-153 547.0 863 39.9
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 6.0e-153 545.8 547 56.5
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 3.0e-152 543.5 944 36.1
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 3.8e-147 526.6 717 43.0
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.8e-141 507.7 669 42.8
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 7.6e-140 502.3 704 41.9
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 4.2e-138 496.5 706 42.4
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.0e-136 490.3 624 43.1
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 3.1e-133 480.3 889 33.7
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.4e-125 454.1 676 41.1
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 6.1e-121 439.5 786 36.9
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 2.0e-116 424.5 890 33.7
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.8e-112 411.4 551 43.7
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 2.8e-110 404.1 640 38.3
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.0e-104 383.6 239 81.2
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 3.7e-102 377.1 696 33.9
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 8.2e-102 375.9 786 30.7
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 6.5e-91 339.7 753 33.6
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 7.0e-85 319.7 260 62.7
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.6e-81 308.5 240 63.3
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.5e-79 302.0 239 63.2
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.7e-75 288.5 960 27.9
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 6.6e-75 286.6 734 29.7
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 4.4e-71 273.9 959 27.5
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 4.4e-71 273.9 959 27.5
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.4e-69 268.9 816 29.3
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.9e-66 258.5 193 66.8
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 2.5e-66 258.1 608 31.4
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 5.6e-66 256.9 220 58.6
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 8.9e-64 249.6 192 66.7
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 2.0e-63 248.4 524 30.3
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.0e-59 236.1 199 56.8
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 4.7e-57 227.3 193 60.6
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 6.2e-57 226.9 468 37.6
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.5e-50 205.7 341 37.0
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-48 199.1 337 37.1
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.0e-47 195.3 753 26.8
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.9e-46 191.4 266 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.8e-40 172.2 317 35.0
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.8e-40 172.2 164 56.1
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 4.0e-40 171.0 223 43.9
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 4.0e-40 171.0 143 64.3
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.8e-39 167.2 221 42.1
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.9e-34 152.1 188 45.2
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.3e-34 151.4 225 40.4
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.1e-32 146.4 182 47.8
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.8e-32 145.6 143 53.1
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.0e-32 144.4 218 39.9
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 3.4e-31 141.4 123 61.0
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.1e-29 136.3 84 83.3
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 7.9e-28 130.2 214 36.9
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 3.3e-26 124.8 222 35.1
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 9.6e-26 123.2 108 56.5
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 6.2e-25 120.6 180 36.7
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 5.8e-23 114.0 83 71.1
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 1.1e-18 99.8 157 36.9
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.1e-18 99.8 182 30.8
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 9.6e-18 96.7 98 43.9
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 2.8e-17 95.1 91 44.0
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.8e-17 94.4 100 50.0
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 5.3e-16 90.9 188 31.9
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.5e-10 72.8 74 50.0
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.6e-07 62.0 68 48.5


User provided reference genes

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