Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 4.9e-108 394.4 192 100.0
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 4.9e-108 394.4 192 100.0
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 3.3e-104 381.7 192 95.8
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 3.8e-100 368.2 196 91.8
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 8.4e-100 367.1 196 91.3
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 9.6e-96 353.6 201 89.1
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 7.8e-90 334.0 195 85.1
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 2.3e-89 332.4 194 85.6
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 2.4e-86 322.4 192 82.8
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 3.1e-86 322.0 192 82.8
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 6.9e-86 320.9 194 83.0
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 1.3e-84 316.6 192 81.8
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 1.3e-84 316.6 192 81.8
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 6.4e-84 314.3 199 78.9
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 4.3e-72 275.0 158 84.2
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 3.8e-68 261.9 204 62.3
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 3.8e-68 261.9 204 62.3
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 3.8e-68 261.9 191 69.1
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 1.1e-67 260.4 197 64.5
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 1.9e-67 259.6 194 68.6
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 2.5e-67 259.2 191 68.1
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 5.5e-67 258.1 201 62.7
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 4.6e-66 255.0 201 62.7
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 6.0e-66 254.6 198 64.6
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 1.0e-65 253.8 202 62.9
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 1.8e-65 253.1 202 61.9
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 1.8e-65 253.1 197 61.9
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 2.3e-65 252.7 202 61.9
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 3.9e-65 251.9 192 64.1
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 5.1e-65 251.5 199 61.8
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 6.7e-65 251.1 190 62.1
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 8.7e-65 250.8 199 64.8
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 8.7e-65 250.8 202 62.9
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 8.7e-65 250.8 187 63.1
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 1.9e-64 249.6 205 61.5
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 3.3e-64 248.8 194 62.9
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 3.3e-64 248.8 196 60.2
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 7.4e-64 247.7 198 61.6
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 7.4e-64 247.7 201 59.7
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 1.6e-63 246.5 194 62.9
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 1.6e-63 246.5 192 63.5
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 3.7e-63 245.4 202 62.4
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 4.8e-63 245.0 189 63.5
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 8.2e-63 244.2 196 60.2
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 1.1e-62 243.8 206 56.8
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 1.1e-62 243.8 198 62.1
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 1.4e-62 243.4 202 58.9
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 1.8e-62 243.0 201 59.2
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 4.1e-62 241.9 211 57.3
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 4.1e-62 241.9 202 60.4
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 5.3e-62 241.5 199 59.3
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 5.3e-62 241.5 193 62.7
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 1.2e-61 240.4 197 59.4
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 1.2e-61 240.4 197 59.4
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 1.5e-61 240.0 196 60.2
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 4.5e-61 238.4 216 56.5
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 4.5e-61 238.4 221 55.7
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 5.9e-61 238.0 181 64.1
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 5.9e-61 238.0 208 58.2
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 5.9e-61 238.0 192 62.5
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.3e-60 236.9 221 55.2
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 1.7e-60 236.5 203 58.1
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 1.7e-60 236.5 202 57.4
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 2.2e-60 236.1 199 58.3
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 2.2e-60 236.1 199 58.3
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 2.2e-60 236.1 207 57.5
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 3.8e-60 235.3 199 58.8
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 5.0e-60 235.0 200 60.0
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 6.5e-60 234.6 199 57.8
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 8.5e-60 234.2 188 61.2
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 1.1e-59 233.8 185 64.9
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 1.9e-59 233.0 194 58.8
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 1.9e-59 233.0 216 55.1
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 3.2e-59 232.3 204 56.4
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 5.5e-59 231.5 204 55.4
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 7.2e-59 231.1 204 57.4
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 9.4e-59 230.7 192 60.4
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 9.4e-59 230.7 199 56.8
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 9.4e-59 230.7 206 55.8
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 1.2e-58 230.3 190 61.1
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 2.7e-58 229.2 199 58.3
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 2.7e-58 229.2 184 60.3
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 2.7e-58 229.2 181 60.8
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 4.6e-58 228.4 201 57.7
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 7.9e-58 227.6 191 57.6
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.0e-57 227.3 179 63.7
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 1.4e-57 226.9 186 59.1
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 6.7e-57 224.6 178 62.9
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 6.7e-57 224.6 178 62.9
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 8.8e-57 224.2 180 59.4
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 1.1e-56 223.8 184 60.9
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.5e-56 223.4 190 56.8
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 3.3e-56 222.2 208 56.7
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 4.3e-56 221.9 190 58.4
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 1.2e-53 213.8 183 60.1
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 1.0e-52 210.7 136 77.2
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 7.9e-50 201.1 186 55.9
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 3.3e-48 195.7 131 71.0
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 2.5e-43 179.5 152 61.2
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.7e-42 176.0 205 46.3
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 1.4e-41 173.7 138 63.8
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 8.8e-41 171.0 117 67.5
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 2.2e-39 166.4 161 52.8
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 4.8e-39 165.2 183 50.8
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 3.1e-38 162.5 142 57.0
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 5.3e-38 161.8 232 40.5
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 1.2e-37 160.6 142 57.0
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 3.5e-37 159.1 112 69.6
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 4.5e-37 158.7 106 75.5
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 1.2e-34 150.6 117 59.0
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.0e-33 147.5 133 52.6
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 1.0e-33 147.5 135 50.4
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 1.7e-31 140.2 154 48.7
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 2.3e-20 103.2 107 52.3
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 3.0e-17 92.8 115 47.8
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 3.0e-17 92.8 67 62.7
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 7.0e-14 81.6 134 38.8
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 2.0e-13 80.1 58 67.2
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 4.5e-13 79.0 48 70.8
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 1.5e-08 63.9 84 44.0
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.1e-06 57.8 63 49.2
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 1.4e-06 57.4 76 36.8


User provided reference genes

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