Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 6.5e-104 380.9 223 100.0
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-102 376.7 223 99.6
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.2e-102 376.7 223 99.6
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 7.2e-87 324.3 223 84.8
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-86 322.8 223 84.3
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 7.0e-82 307.8 213 80.3
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 5.9e-81 304.7 224 82.6
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.2e-77 291.6 223 73.1
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.7e-75 285.4 220 75.9
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.4e-67 258.1 224 71.0
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 8.3e-67 257.7 230 68.3
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.0e-64 250.8 227 70.5
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.6e-41 172.2 223 53.4
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 4.4e-36 155.6 210 48.6
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 5.4e-34 148.7 218 45.4
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.6e-33 147.1 195 48.2
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 5.1e-32 142.1 197 46.7
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.3e-30 137.5 214 42.1
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.3e-30 137.5 196 46.4
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.8e-30 135.6 197 45.2
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 6.2e-30 135.2 198 46.0
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.4e-29 134.0 221 47.5
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.8e-29 133.7 202 46.0
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.4e-29 133.3 218 41.3
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 3.1e-29 132.9 219 43.4
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.0e-29 132.5 207 43.0
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.3e-29 132.1 214 43.5
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 5.3e-29 132.1 202 45.5
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.9e-29 131.7 214 42.5
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.9e-29 131.7 214 42.5
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.2e-28 131.0 204 46.1
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-28 131.0 204 46.1
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-28 131.0 204 46.1
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.5e-28 130.6 194 44.8
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.0e-28 130.2 196 40.8
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.5e-28 129.0 204 46.6
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.5e-28 129.0 218 41.7
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 4.5e-28 129.0 211 41.2
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 4.5e-28 129.0 198 47.0
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.8e-28 128.6 215 43.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 9.9e-28 127.9 220 39.1
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.2e-27 126.7 212 40.1
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.2e-27 126.7 196 43.4
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.9e-27 126.3 205 45.4
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 4.9e-27 125.6 197 40.6
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 6.4e-27 125.2 214 41.1
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.1e-26 124.4 204 44.6
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.1e-26 124.4 200 44.0
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.4e-26 123.2 221 37.1
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 4.2e-26 122.5 195 46.7
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 5.4e-26 122.1 196 40.3
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 7.1e-26 121.7 203 38.9
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.1e-26 121.7 196 44.4
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.6e-25 120.6 213 41.8
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.1e-25 120.2 213 37.1
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.1e-25 120.2 200 41.5
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.7e-25 119.8 214 44.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 2.7e-25 119.8 214 45.8
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.7e-25 119.8 195 40.5
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.7e-25 119.8 195 40.0
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 6.0e-25 118.6 213 38.0
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.3e-24 117.5 196 43.9
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.8e-24 117.1 192 40.6
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.3e-24 116.7 196 43.9
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.0e-24 116.3 195 44.6
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 5.1e-24 115.5 219 39.7
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 8.7e-24 114.8 198 39.9
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.7e-24 114.8 196 39.8
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-23 114.0 195 42.1
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.5e-23 114.0 219 40.2
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.5e-23 113.2 213 39.0
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 3.3e-23 112.8 195 39.0
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 3.3e-23 112.8 195 41.0
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.6e-23 112.1 192 40.1
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 5.6e-23 112.1 192 42.2
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 7.4e-23 111.7 218 38.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 7.4e-23 111.7 136 52.2
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 9.6e-23 111.3 160 43.1
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 9.6e-23 111.3 192 41.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 9.6e-23 111.3 214 36.4
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.3e-22 110.9 236 39.4
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 1.3e-22 110.9 195 36.4
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.6e-22 110.5 160 43.8
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.6e-22 110.5 219 39.3
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.6e-22 110.5 219 41.1
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.1e-22 110.2 214 40.2
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.8e-22 109.8 214 41.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 3.6e-22 109.4 197 42.1
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.6e-22 109.4 160 44.4
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 6.2e-22 108.6 222 38.3
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 6.2e-22 108.6 195 39.0
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 8.1e-22 108.2 195 39.0
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 8.1e-22 108.2 215 40.9
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.1e-21 107.8 195 39.5
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-21 107.8 214 39.7
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.1e-21 107.8 214 39.7
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.1e-21 107.8 221 36.2
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.4e-21 107.5 196 38.8
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.8e-21 107.1 194 39.7
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.8e-21 107.1 209 44.0
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 3.1e-21 106.3 196 40.3
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 4.0e-21 105.9 194 39.7
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.3e-21 105.5 191 41.9
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 6.9e-21 105.1 196 38.8
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 9.0e-21 104.8 192 39.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.2e-20 104.4 178 40.4
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.2e-20 104.4 224 36.6
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-20 103.6 193 40.9
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 2.6e-20 103.2 214 42.5
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.6e-20 103.2 144 45.8
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 5.8e-20 102.1 193 40.4
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 7.6e-20 101.7 192 39.6
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 9.9e-20 101.3 196 38.3
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.3e-19 100.9 195 39.0
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.3e-19 100.9 191 37.7
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.3e-19 100.9 199 37.7
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.2e-19 100.1 194 39.2
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 3.8e-19 99.4 197 40.1
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 4.9e-19 99.0 198 37.4
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.4e-19 98.6 195 38.5
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.4e-19 98.6 192 41.1
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 8.4e-19 98.2 221 37.6
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.1e-18 97.8 229 36.2
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.1e-18 97.8 199 37.7
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.2e-18 96.3 214 36.9
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 4.2e-18 95.9 196 35.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 4.2e-18 95.9 221 37.6
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 5.5e-18 95.5 214 35.5
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 7.1e-18 95.1 214 36.9
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 7.1e-18 95.1 129 45.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.6e-17 94.0 214 41.6
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.1e-17 93.6 196 32.1
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 3.0e-16 89.7 221 33.9
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 3.0e-16 89.7 198 36.9
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 3.0e-16 89.7 200 34.5
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 6.7e-16 88.6 197 34.0
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.5e-15 87.4 231 33.8
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.5e-15 87.4 202 32.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.5e-15 86.7 217 35.0
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.5e-15 86.7 176 35.8
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 3.3e-15 86.3 223 34.5
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 3.3e-15 86.3 201 33.8
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 4.3e-15 85.9 147 37.4
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 4.3e-15 85.9 219 35.2
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 7.4e-15 85.1 198 33.3
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.4e-15 85.1 195 35.9
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 7.4e-15 85.1 227 35.7
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 9.6e-15 84.7 223 31.8
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-14 84.0 195 35.4
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-14 84.0 195 35.4
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.8e-14 83.2 225 32.0
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.7e-14 82.8 131 40.5
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 4.8e-14 82.4 218 32.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.4e-13 80.9 186 33.3
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.4e-13 80.9 153 37.3
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 4.0e-13 79.3 215 34.0
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.0e-13 79.3 199 35.2
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 5.3e-13 79.0 153 35.3
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 6.9e-13 78.6 204 33.8
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-12 77.8 195 34.4
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.0e-12 77.0 196 30.6
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.3e-11 74.3 149 37.6
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 3.8e-11 72.8 194 34.0
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-10 70.1 217 32.7
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 4.2e-10 69.3 92 46.7
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 4.2e-10 69.3 195 32.8
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.5e-10 68.9 142 33.1
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 7.1e-10 68.6 217 32.3
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 7.1e-10 68.6 284 28.2
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.3e-10 68.2 193 32.6
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 3.5e-09 66.2 195 31.8
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.0e-08 64.7 197 29.4
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.0e-08 63.2 195 31.3
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 5.1e-08 62.4 197 31.5
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.9e-07 60.5 217 30.9
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.3e-07 59.7 178 28.7
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.7e-07 58.9 177 27.7
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.8e-06 55.8 195 29.7


User provided reference genes

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