Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p69650 Brassica napus HOM05D007846 ORTHO05D010837 9.4e-80 300.4 187 100.0
BolC9t59708H Brassica oleracea HOM05D007846 ORTHO05D010837 9.4e-80 300.4 187 100.0
A10p29260 Brassica napus HOM05D007846 ORTHO05D010837 1.4e-54 216.9 170 77.6
BraA10t44972Z Brassica rapa HOM05D007846 ORTHO05D010837 1.4e-54 216.9 170 77.6
BcaC06g32487 Brassica carinata HOM05D007846 ORTHO05D010837 1.5e-29 133.7 92 89.1
Sp6g35350 Schrenkiella parvula HOM05D007846 ORTHO05D010837 2.7e-26 122.9 187 50.8
A10p29250 Brassica napus HOM05D007846 ORTHO05D010837 1.5e-24 117.1 160 52.5
BraA10t44971Z Brassica rapa HOM05D007846 ORTHO05D010837 1.5e-24 117.1 160 52.5
BcaC06g32428 Brassica carinata HOM05D007846 ORTHO05D010837 3.3e-24 115.9 160 51.9
C09p69640 Brassica napus HOM05D007846 ORTHO05D010837 3.3e-24 115.9 160 51.9
BolC9t59707H Brassica oleracea HOM05D007846 ORTHO05D010837 3.3e-24 115.9 160 51.9
Thhalv10014560m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 8.1e-23 111.3 145 51.7
BcaC03g13199 Brassica carinata HOM05D007846 ORTHO05D010837 1.1e-22 110.9 96 69.8
C02p03150 Brassica napus HOM05D007846 ORTHO05D010837 1.1e-22 110.9 96 69.8
BolC8t49462H Brassica oleracea HOM05D007846 ORTHO05D010837 2.3e-22 109.8 148 53.4
C08p18270 Brassica napus HOM05D007846 ORTHO05D010837 3.1e-22 109.4 148 53.4
A03p03350 Brassica napus HOM05D007846 ORTHO05D010837 6.8e-22 108.2 119 58.8
C03p03790 Brassica napus HOM05D007846 ORTHO05D010837 8.9e-22 107.8 119 58.8
BraA02t04921Z Brassica rapa HOM05D007846 ORTHO05D010837 8.9e-22 107.8 93 71.0
BcaC06g32486 Brassica carinata HOM05D007846 ORTHO05D010837 2.0e-21 106.7 154 48.7
BolC2t06277H Brassica oleracea HOM05D007846 ORTHO05D010837 2.6e-21 106.3 93 69.9
BraA08t34994Z Brassica rapa HOM05D007846 ORTHO05D010837 3.4e-21 105.9 146 52.7
Thhalv10014587m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 4.4e-21 105.5 80 75.0
BcaB01g06047 Brassica carinata HOM05D007846 ORTHO05D010837 7.5e-21 104.8 97 66.0
Carub.0006s0651 Capsella rubella HOM05D007846 ORTHO05D010837 9.8e-21 104.4 97 61.9
AT5G07530 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 1.7e-20 103.6 141 50.4
BcaB01g06048 Brassica carinata HOM05D007846 ORTHO05D010837 3.7e-20 102.4 89 69.7
AL6G17840 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 6.4e-20 101.7 137 51.8
BcaB01g05692 Brassica carinata HOM05D007846 ORTHO05D010837 2.1e-18 96.7 92 64.1
BcaB01g06046 Brassica carinata HOM05D007846 ORTHO05D010837 3.0e-17 92.8 97 60.8
BolC3t12914H Brassica oleracea HOM05D007846 ORTHO05D010837 3.0e-17 92.8 97 60.8
Thhalv10013795m.g Eutrema salsugineum HOM05D007846 ORTHO05D195878 5.6e-16 88.6 100 55.0
CARHR205620 Cardamine hirsuta HOM05D007846 ORTHO05D010837 2.8e-15 86.3 115 45.2
BcaC06g32488 Brassica carinata HOM05D021341 ORTHO05D093304 6.2e-15 85.1 81 63.0
A03p03340 Brassica napus HOM05D007846 ORTHO05D010837 8.1e-15 84.7 97 57.7
BraA03t09686Z Brassica rapa HOM05D007846 ORTHO05D010837 8.1e-15 84.7 97 57.7
AL6G17910 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 6.8e-14 81.6 81 65.4
Sp6g35330 Schrenkiella parvula HOM05D007846 ORTHO05D021761 1.5e-13 80.5 97 50.5
Carub.0006s0650 Capsella rubella HOM05D007846 ORTHO05D010837 4.4e-13 79.0 119 49.6
Sp6g35340 Schrenkiella parvula HOM05D007846 ORTHO05D371621 7.6e-13 78.2 123 48.0
AT5G07600 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 2.2e-12 76.6 81 61.7
AL6G17830 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 8.4e-12 74.7 149 43.6
BcaB05g21610 Brassica carinata HOM05D007846 ORTHO05D010837 1.1e-11 74.3 105 46.7
AL6G17850 Arabidopsis lyrata HOM05D007846 ORTHO05D031404 1.4e-11 73.9 97 47.4
AT5G07540 Arabidopsis thaliana HOM05D007846 ORTHO05D031404 1.4e-11 73.9 97 47.4
Carub.0006s0658 Capsella rubella HOM05D007846 ORTHO05D010837 1.4e-11 73.9 126 46.0
AT5G07520 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 2.4e-11 73.2 153 39.9
Carub.0006s0653 Capsella rubella HOM05D007846 ORTHO05D000624 2.4e-11 73.2 90 46.7
AL6G17860 Arabidopsis lyrata HOM05D007846 ORTHO05D000624 1.6e-10 70.5 90 45.6
AT5G07550 Arabidopsis thaliana HOM05D007846 ORTHO05D000624 3.5e-10 69.3 90 46.7
C09p69670 Brassica napus HOM05D007846 ORTHO05D021761 1.3e-09 67.4 97 46.4
BolC9t59710H Brassica oleracea HOM05D007846 ORTHO05D021761 1.3e-09 67.4 97 46.4
AT5G07510 Arabidopsis thaliana HOM05D007846 ORTHO05D038626 3.9e-09 65.9 90 51.1
AL6G17810 Arabidopsis lyrata HOM05D007846 ORTHO05D038626 5.1e-09 65.5 91 48.4
Thhalv10015090m.g Eutrema salsugineum HOM05D007846 ORTHO05D000624 5.1e-09 65.5 83 50.6
BcaC06g32424 Brassica carinata HOM05D007846 ORTHO05D021761 6.6e-09 65.1 97 47.4
CARHR205610 Cardamine hirsuta HOM05D007846 ORTHO05D000624 6.6e-09 65.1 83 47.0
Aa31LG3G18890 Aethionema arabicum HOM05D007846 ORTHO05D010837 8.6e-09 64.7 98 41.8
A10p29300 Brassica napus HOM05D007846 ORTHO05D021761 8.6e-09 64.7 97 46.4
BraA10t44974Z Brassica rapa HOM05D007846 ORTHO05D021761 8.6e-09 64.7 97 46.4
Sp6g35320 Schrenkiella parvula HOM05D000805 ORTHO05D000624 2.5e-08 63.2 80 52.5
Carub.0006s0652 Capsella rubella HOM05D007846 ORTHO05D031404 3.3e-08 62.8 97 43.3
Thhalv10015089m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 3.3e-08 62.8 83 49.4
Sp6g35310 Schrenkiella parvula HOM05D007846 ORTHO05D000624 4.3e-08 62.4 83 48.2
BcaC06g32423 Brassica carinata HOM05D007846 ORTHO05D023961 7.3e-08 61.6 76 51.3
A10p29310 Brassica napus HOM05D007846 ORTHO05D023961 7.3e-08 61.6 76 51.3
C09p69680 Brassica napus HOM05D007846 ORTHO05D023961 7.3e-08 61.6 76 51.3
BolC9t59711H Brassica oleracea HOM05D007846 ORTHO05D023961 7.3e-08 61.6 76 51.3
BraA02t04922Z Brassica rapa HOM05D007846 ORTHO05D010837 7.3e-08 61.6 117 43.6
BraA10t44975Z Brassica rapa HOM05D007846 ORTHO05D023961 7.3e-08 61.6 76 51.3
C02p03180 Brassica napus HOM05D007846 ORTHO05D010837 1.2e-07 60.8 117 43.6
BolC2t06280H Brassica oleracea HOM05D007846 ORTHO05D010837 1.2e-07 60.8 117 43.6
CARHR205600 Cardamine hirsuta HOM05D007846 ORTHO05D012592 2.8e-07 59.7 81 45.7
AL6G17870 Arabidopsis lyrata HOM05D007846 ORTHO05D012592 4.7e-07 58.9 90 43.3
BolC3t12915H Brassica oleracea HOM05D000805 ORTHO05D000624 4.7e-07 58.9 83 47.0
AT5G07560 Arabidopsis thaliana HOM05D007846 ORTHO05D012592 6.2e-07 58.5 83 45.8
BcaB01g06049 Brassica carinata HOM05D007846 ORTHO05D000624 6.2e-07 58.5 79 48.1
C03p03800 Brassica napus HOM05D000805 ORTHO05D000624 6.2e-07 58.5 83 47.0
BcaC03g13197 Brassica carinata HOM05D007846 ORTHO05D010837 8.1e-07 58.2 106 45.3
A03p03360 Brassica napus HOM05D000805 ORTHO05D000624 8.1e-07 58.2 83 45.8
BcaC06g32490 Brassica carinata HOM05D007846 ORTHO05D000624 1.8e-06 57.0 77 48.1
BraA03t09687Z Brassica rapa HOM05D000805 ORTHO05D000624 1.8e-06 57.0 83 45.8
Aa31LG3G18860 Aethionema arabicum HOM05D007846 ORTHO05D000624 2.4e-06 56.6 74 44.6
CARHR205580 Cardamine hirsuta HOM05D007846 ORTHO05D012592 3.1e-06 56.2 71 47.9
BcaC06g32425 Brassica carinata HOM05D021341 ORTHO05D024077 5.2e-06 55.5 46 73.9
A10p29270 Brassica napus HOM05D021341 ORTHO05D024077 5.2e-06 55.5 46 73.9
C09p69660 Brassica napus HOM05D021341 ORTHO05D024077 5.2e-06 55.5 46 73.9
BolC9t59709H Brassica oleracea HOM05D021341 ORTHO05D024077 5.2e-06 55.5 46 73.9
BraA02t04924Z Brassica rapa HOM05D007846 ORTHO05D012592 5.2e-06 55.5 112 40.2
BraA10t44973Z Brassica rapa HOM05D021341 ORTHO05D024077 5.2e-06 55.5 46 73.9
DCAR_026163 Daucus carota HOM05D000805 ORTHO05D000624 5.2e-06 55.5 83 42.2
BcaB05g21609 Brassica carinata HOM05D000805 ORTHO05D012592 8.9e-06 54.7 81 45.7


User provided reference genes

Program Settings