Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-46 189.5 96 100.0
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.2e-46 189.5 96 100.0
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.7e-45 185.7 94 97.9
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 6.6e-45 183.7 93 97.8
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 1.5e-36 156.0 82 93.9
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.5e-33 146.0 93 74.2
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 3.4e-33 144.8 95 74.7
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.9e-28 129.0 93 71.0
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.3e-28 128.3 90 70.0
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.7e-27 124.4 93 69.9
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 1.8e-26 122.5 73 78.1
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 7.1e-23 110.5 93 57.0
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 6.0e-22 107.5 93 55.9
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.0e-21 106.7 93 55.9
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.9e-21 104.8 93 57.0
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.5e-20 102.1 93 54.8
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 6.8e-18 94.0 92 52.2
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.7e-16 88.2 90 47.8
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.5e-14 81.6 85 51.8
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 3.5e-14 81.6 93 41.9
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 3.5e-14 81.6 83 47.0
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 1.3e-13 79.7 93 44.1
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 2.3e-13 79.0 89 47.2
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 2.3e-13 79.0 93 39.8
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.0e-13 78.6 93 39.8
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 3.0e-13 78.6 83 43.4
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 3.9e-13 78.2 83 45.8
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 8.6e-13 77.0 81 44.4
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 8.6e-13 77.0 86 45.3
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.1e-12 76.6 84 42.9
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 83 44.6
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.9e-12 75.9 85 44.7
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 1.9e-12 75.9 93 39.8
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 1.9e-12 75.9 81 43.2
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.9e-12 75.9 90 42.2
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 2.5e-12 75.5 67 49.3
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 2.5e-12 75.5 84 45.2
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 3.3e-12 75.1 89 42.7
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 3.3e-12 75.1 86 41.9
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 3.3e-12 75.1 90 38.9
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 4.3e-12 74.7 92 43.5
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 9.6e-12 73.6 84 40.5
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 9.6e-12 73.6 89 39.3
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 9.6e-12 73.6 70 45.7
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 9.6e-12 73.6 87 44.8
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 9.6e-12 73.6 80 47.5
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.2e-11 73.2 90 40.0
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.2e-11 73.2 83 41.0
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 1.6e-11 72.8 66 47.0
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 1.6e-11 72.8 88 39.8
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 2.1e-11 72.4 87 37.9
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 2.1e-11 72.4 85 47.1
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 2.1e-11 72.4 73 45.2
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 2.8e-11 72.0 93 41.9
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 2.8e-11 72.0 85 41.2
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 3.6e-11 71.6 92 40.2
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 4.7e-11 71.2 92 40.2
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 6.2e-11 70.9 94 39.4
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 6.2e-11 70.9 93 37.6
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 8.1e-11 70.5 82 40.2
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 8.1e-11 70.5 61 50.8
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 8.1e-11 70.5 97 40.2
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.1e-10 70.1 90 43.3
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.1e-10 70.1 61 50.8
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 1.4e-10 69.7 73 43.8
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.4e-10 69.7 84 40.5
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.8e-10 69.3 91 40.7
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.8e-10 69.3 85 40.0
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.8e-10 69.3 84 39.3
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 2.4e-10 68.9 95 37.9
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 2.4e-10 68.9 96 40.6
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 2.4e-10 68.9 76 47.4
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 2.4e-10 68.9 65 44.6
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 3.1e-10 68.6 63 49.2
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 4.0e-10 68.2 97 38.1
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.0e-10 68.2 97 37.1
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.0e-10 68.2 82 39.0
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.0e-10 68.2 82 39.0
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 5.2e-10 67.8 62 54.8
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 6.8e-10 67.4 89 37.1
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 6.8e-10 67.4 90 38.9
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 6.8e-10 67.4 85 37.6
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 8.9e-10 67.0 83 39.8
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.2e-09 66.6 89 37.1
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.2e-09 66.6 89 37.1
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.2e-09 66.6 89 37.1
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.5e-09 66.2 66 45.5
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.5e-09 66.2 97 35.1
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 2.0e-09 65.9 88 42.0
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 2.0e-09 65.9 88 42.0
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.0e-09 65.9 88 38.6
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 3.4e-09 65.1 93 35.5
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 3.4e-09 65.1 87 37.9
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 3.4e-09 65.1 90 38.9
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 3.4e-09 65.1 93 34.4
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 3.4e-09 65.1 90 40.0
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 4.4e-09 64.7 82 40.2
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 5.8e-09 64.3 90 42.2
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 5.8e-09 64.3 87 37.9
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 7.6e-09 63.9 80 38.8
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 9.9e-09 63.5 92 33.7
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 9.9e-09 63.5 65 43.1
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.3e-08 63.2 88 37.5
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 1.3e-08 63.2 91 36.3
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.7e-08 62.8 79 36.7
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 1.7e-08 62.8 66 40.9
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 1.7e-08 62.8 67 40.3
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.7e-08 62.8 69 42.0
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.7e-08 62.8 53 56.6
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 1.7e-08 62.8 81 38.3
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.2e-08 62.4 88 34.1
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.2e-08 62.4 63 42.9
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 2.2e-08 62.4 63 42.9
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.9e-08 62.0 72 43.1
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 3.8e-08 61.6 83 36.1
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 3.8e-08 61.6 83 36.1
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 3.8e-08 61.6 83 36.1
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 3.8e-08 61.6 83 36.1
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 3.8e-08 61.6 86 39.5
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 3.8e-08 61.6 84 36.9
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 6.4e-08 60.8 88 34.1
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 6.4e-08 60.8 65 43.1
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 6.4e-08 60.8 93 37.6
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 8.4e-08 60.5 83 36.1
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 8.4e-08 60.5 88 34.1
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.1e-07 60.1 62 41.9
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 1.1e-07 60.1 94 39.4
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 1.4e-07 59.7 83 34.9
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 9.3e-07 57.0 84 34.5


User provided reference genes

Program Settings