Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p69030 Brassica napus HOM05D049712 ORTHO05D039532 6.4e-64 247.3 128 100.0
BcaC06g32514 Brassica carinata HOM05D049712 ORTHO05D039532 6.3e-35 151.0 77 100.0
BcaC06g32513 Brassica carinata HOM05D000759 ORTHO05D000574 1.8e-10 69.7 33 100.0
BcaB05g21599 Brassica carinata HOM05D000759 ORTHO05D000574 7.7e-09 64.3 33 84.8
BcaB01g06054 Brassica carinata HOM05D000759 ORTHO05D000574 2.2e-08 62.8 33 81.8
C09p69070 Brassica napus HOM05D000759 ORTHO05D000574 2.2e-08 62.8 33 87.9
BraA02t04931Z Brassica rapa HOM05D000759 ORTHO05D000574 2.2e-08 62.8 33 81.8
CSS0040762 Camellia sinensis var. sinensis HOM05D000759 ORTHO05D000574 2.2e-08 62.8 33 81.8
C02p03270 Brassica napus HOM05D000759 ORTHO05D000574 2.9e-08 62.4 32 84.4
BolC2t06291H Brassica oleracea HOM05D000759 ORTHO05D000574 2.9e-08 62.4 32 84.4
CSS0040913 Camellia sinensis var. sinensis HOM05D000759 ORTHO05D000574 3.8e-08 62.0 48 60.4
Thhalv10016030m.g Eutrema salsugineum HOM05D000759 ORTHO05D000574 3.8e-08 62.0 33 81.8
BcaC06g32503 Brassica carinata HOM05D000759 ORTHO05D000574 6.5e-08 61.2 33 81.8
C09p69060 Brassica napus HOM05D000759 ORTHO05D000574 6.5e-08 61.2 33 84.8
BolC9t59649H Brassica oleracea HOM05D000759 ORTHO05D000574 6.5e-08 61.2 33 84.8
TWI63G0896 Tripterygium wilfordii HOM05D000759 ORTHO05D000574 1.1e-07 60.5 40 65.0
BcaB01g06056 Brassica carinata HOM05D000759 ORTHO05D000574 1.5e-07 60.1 33 75.8
C03p03870 Brassica napus HOM05D000759 ORTHO05D000574 1.5e-07 60.1 33 75.8
BolC3t12924H Brassica oleracea HOM05D000759 ORTHO05D000574 1.5e-07 60.1 33 78.8
A03p03450 Brassica napus HOM05D000759 ORTHO05D000574 1.9e-07 59.7 33 75.8
BraA03t09695Z Brassica rapa HOM05D000759 ORTHO05D000574 1.9e-07 59.7 33 75.8
Rhsim01G0035100 Rhododendron simsii HOM05D000759 ORTHO05D000574 1.9e-07 59.7 33 75.8
AT5G07740 Arabidopsis thaliana HOM05D000759 ORTHO05D000574 2.5e-07 59.3 33 75.8
Gohir.D12G182300 Gossypium hirsutum HOM05D000759 ORTHO05D000574 2.5e-07 59.3 33 78.8
Gorai.008G195600 Gossypium raimondii HOM05D000759 ORTHO05D000574 2.5e-07 59.3 33 78.8
Sp6g35160 Schrenkiella parvula HOM05D000759 ORTHO05D000574 2.5e-07 59.3 33 75.8
TAR629G1202 Trochodendron aralioides HOM05D000759 ORTHO05D000574 2.5e-07 59.3 33 75.8
Duzib068G0582 Durio zibethinus HOM05D000759 ORTHO05D000574 4.2e-07 58.5 33 72.7
Migut.I00218 Erythranthe guttata HOM05D000759 ORTHO05D000574 4.2e-07 58.5 33 75.8
Gohir.A12G179700 Gossypium hirsutum HOM05D000759 ORTHO05D000574 4.2e-07 58.5 33 78.8
Hma1.2p1_0028F.1_g017480 Hydrangea macrophylla HOM05D000759 ORTHO05D000574 4.2e-07 58.5 33 72.7
Actinidia10517 Actinidia chinensis HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
Actinidia22293 Actinidia chinensis HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
Carub.0006s0670 Capsella rubella HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
Cfa020836 Carpinus fangiana HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
Haze_19219 Corylus avellana HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
FvH4_1g01040 Fragaria vesca HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
FAN19G2320 Fragaria x ananassa HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
FAN23G2264 Fragaria x ananassa HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
FAN26G2076 Fragaria x ananassa HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
FAN28G0669 Fragaria x ananassa HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
Lj9A716G45 Lonicera japonica HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
MD15G1153000 Malus domestica HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
TAR371G1145 Trochodendron aralioides HOM05D000759 ORTHO05D000574 5.5e-07 58.2 33 72.7
AL6G18110 Arabidopsis lyrata HOM05D000759 ORTHO05D000574 7.2e-07 57.8 33 72.7
BolC9t59650H Brassica oleracea HOM05D000759 ORTHO05D000574 7.2e-07 57.8 33 78.8
Lj5g0015952 Lotus japonicus HOM05D000759 ORTHO05D000574 7.2e-07 57.8 33 72.7
Nitab4.5_0005188g0060 Nicotiana tabacum HOM05D000759 ORTHO05D000574 7.2e-07 57.8 33 75.8
Nitab4.5_0007899g0040 Nicotiana tabacum HOM05D000759 ORTHO05D000574 7.2e-07 57.8 33 75.8
CiPaw.15G175500 Carya illinoinensis HOM05D000759 ORTHO05D000574 9.4e-07 57.4 33 72.7
CiPaw.16G113800 Carya illinoinensis HOM05D000759 ORTHO05D000574 9.4e-07 57.4 33 72.7
Medtr4g109040 Medicago truncatula HOM05D000759 ORTHO05D000574 9.4e-07 57.4 33 72.7
Peaxi162Scf00252g00118 Petunia axillaris HOM05D000759 ORTHO05D000574 9.4e-07 57.4 33 72.7
Rhsim02G0213600 Rhododendron simsii HOM05D000759 ORTHO05D000574 9.4e-07 57.4 33 72.7
Sabra18G0022000 Salix brachista HOM05D000759 ORTHO05D000574 9.4e-07 57.4 33 72.7
Solyc07g005500.2 Solanum lycopersicum HOM05D000759 ORTHO05D000574 9.4e-07 57.4 33 72.7
Sopen07g001600 Solanum pennellii HOM05D000759 ORTHO05D000574 9.4e-07 57.4 33 72.7
Thecc.03G094800 Theobroma cacao HOM05D000759 ORTHO05D000574 9.4e-07 57.4 33 72.7
vmacro11246 Vaccinium macrocarpon HOM05D000759 ORTHO05D000574 9.4e-07 57.4 33 72.7
Actinidia04292 Actinidia chinensis HOM05D000759 ORTHO05D000574 1.2e-06 57.0 33 72.7
Actinidia25396 Actinidia chinensis HOM05D000759 ORTHO05D000574 1.2e-06 57.0 33 72.7
ATR0730G207 Amborella trichopoda HOM05D000759 ORTHO05D000574 1.2e-06 57.0 33 69.7
arahy.Tifrunner.gnm1.ann1.6R56IB Arachis hypogaea HOM05D000759 ORTHO05D000574 1.2e-06 57.0 33 72.7
arahy.Tifrunner.gnm1.ann1.PTH5J3 Arachis hypogaea HOM05D000759 ORTHO05D000574 1.2e-06 57.0 33 72.7
A10p28730 Brassica napus HOM05D000759 ORTHO05D000574 1.2e-06 57.0 33 78.8
BraA10t44920Z Brassica rapa HOM05D000759 ORTHO05D000574 1.2e-06 57.0 33 78.8
CANSAT80G2621 Cannabis sativa HOM05D000759 ORTHO05D000574 1.2e-06 57.0 33 72.7
Dinv38752 Davidia involucrata HOM05D000759 ORTHO05D000574 1.2e-06 57.0 33 75.8
Psat6g026760 Pisum sativum HOM05D000759 ORTHO05D000574 1.2e-06 57.0 32 75.0
PGR102G2457 Punica granatum HOM05D000759 ORTHO05D000574 1.2e-06 57.0 32 71.9
TWI34G0901 Tripterygium wilfordii HOM05D000759 ORTHO05D000574 1.2e-06 57.0 33 72.7
Aa31LG3G18700 Aethionema arabicum HOM05D000759 ORTHO05D000574 1.6e-06 56.6 33 72.7
MSTRG.11766 Avicennia marina HOM05D000759 ORTHO05D000574 1.6e-06 56.6 33 69.7
A10p28740 Brassica napus HOM05D000759 ORTHO05D000574 1.6e-06 56.6 33 72.7
BraA10t44921Z Brassica rapa HOM05D000759 ORTHO05D000574 1.6e-06 56.6 33 72.7
Duzib205G1063 Durio zibethinus HOM05D000759 ORTHO05D000574 1.6e-06 56.6 33 69.7
Glyma.02G203200 Glycine max HOM05D000759 ORTHO05D000574 1.6e-06 56.6 32 75.0
Glyma.06G196800 Glycine max HOM05D000759 ORTHO05D000574 1.6e-06 56.6 33 72.7
Glyma.17G074500 Glycine max HOM05D000759 ORTHO05D000574 1.6e-06 56.6 32 75.0
Lj4g0013729 Lotus japonicus HOM05D000759 ORTHO05D000574 1.6e-06 56.6 32 75.0
Medtr4g131020 Medicago truncatula HOM05D000759 ORTHO05D000574 1.6e-06 56.6 32 75.0
Psat4g009240 Pisum sativum HOM05D000759 ORTHO05D000574 1.6e-06 56.6 32 75.0
RcHm_v2.0_Chr2g0085801 Rosa chinensis HOM05D000759 ORTHO05D000574 1.6e-06 56.6 33 69.7
TPR.G39181 Trifolium pratense HOM05D000759 ORTHO05D000574 1.6e-06 56.6 32 75.0
HPP92_021961 Vanilla planifolia HOM05D000759 ORTHO05D000574 1.6e-06 56.6 33 69.7
Zm00001eb176750 Zea mays HOM05D000759 ORTHO05D000574 1.6e-06 56.6 33 69.7
Zm00001eb257770 Zea mays HOM05D000759 ORTHO05D000574 1.6e-06 56.6 33 69.7
Atru.chr7.2543 Acer truncatum HOM05D000759 ORTHO05D000574 2.1e-06 56.2 33 69.7
MSTRG.6122 Avicennia marina HOM05D000759 ORTHO05D000574 2.1e-06 56.2 32 71.9
BcaC06g32506 Brassica carinata HOM05D000759 ORTHO05D000574 2.1e-06 56.2 74 45.9
CSS0048297 Camellia sinensis var. sinensis HOM05D000759 ORTHO05D000574 2.1e-06 56.2 33 69.7
CAN.G1424.12 Capsicum annuum HOM05D000759 ORTHO05D000574 2.1e-06 56.2 33 69.7
Dinv40975 Davidia involucrata HOM05D000759 ORTHO05D000574 2.1e-06 56.2 33 69.7
Dinv42866 Davidia involucrata HOM05D000759 ORTHO05D000574 2.1e-06 56.2 33 69.7
Dinv43234 Davidia involucrata HOM05D000759 ORTHO05D000574 2.1e-06 56.2 33 69.7
Oeu032508.2 Olea europaea HOM05D000759 ORTHO05D000574 2.1e-06 56.2 33 69.7
QL02p093050 Quercus lobata HOM05D000759 ORTHO05D000574 2.1e-06 56.2 33 72.7
GSVIVG01007958001 Vitis vinifera HOM05D000759 ORTHO05D000574 2.1e-06 56.2 33 72.7
Atru.chr9.324 Acer truncatum HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 69.7
Cfa013063 Carpinus fangiana HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 69.7
Ca_13071_v3 Cicer arietinum L. HOM05D000759 ORTHO05D000574 2.7e-06 55.8 32 71.9
Ca_13869_v3 Cicer arietinum L. HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 69.7
Ciclev10018877m.g Citrus clementina HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 72.7
Haze_21423 Corylus avellana HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 69.7
CsaV3_1G002600 Cucumis sativus L. HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 69.7
Gohir.A13G184401 Gossypium hirsutum HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 66.7
Gohir.D13G190601 Gossypium hirsutum HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 66.7
Gorai.013G216500 Gossypium raimondii HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 66.7
TPR.G38847 Trifolium pratense HOM05D000759 ORTHO05D000574 2.7e-06 55.8 32 71.9
TPR.G38874 Trifolium pratense HOM05D000759 ORTHO05D000574 2.7e-06 55.8 32 71.9
TWI81G0606 Tripterygium wilfordii HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 72.7
GSVIVG01003875001 Vitis vinifera HOM05D000759 ORTHO05D000574 2.7e-06 55.8 33 66.7
Cfa020835 Carpinus fangiana HOM05D000759 ORTHO05D000574 3.6e-06 55.5 33 69.7
Cc06_g15130 Coffea canephora HOM05D000759 ORTHO05D000574 3.6e-06 55.5 32 68.8
Migut.I00219 Erythranthe guttata HOM05D000759 ORTHO05D000574 3.6e-06 55.5 32 75.0
Gohir.A05G059300 Gossypium hirsutum HOM05D000759 ORTHO05D000574 3.6e-06 55.5 33 66.7
Gohir.D05G061432 Gossypium hirsutum HOM05D000759 ORTHO05D000574 3.6e-06 55.5 33 66.7
Gorai.009G062500 Gossypium raimondii HOM05D000759 ORTHO05D000574 3.6e-06 55.5 33 66.7
Lj1g0002828 Lotus japonicus HOM05D000759 ORTHO05D000574 3.6e-06 55.5 33 69.7
MSTRG.22995 Avicennia marina HOM05D000759 ORTHO05D000574 4.7e-06 55.1 33 69.7
A10p28720 Brassica napus HOM05D000759 ORTHO05D000574 4.7e-06 55.1 48 62.5
BraA10t44919Z Brassica rapa HOM05D000759 ORTHO05D000574 4.7e-06 55.1 48 62.5
CiPaw.07G229700 Carya illinoinensis HOM05D000759 ORTHO05D000574 4.7e-06 55.1 33 66.7
Cc04_g14340 Coffea canephora HOM05D000759 ORTHO05D000574 4.7e-06 55.1 33 69.7
COL.COLO4_18795 Corchorus olitorius HOM05D000759 ORTHO05D000574 4.7e-06 55.1 33 63.6
Dinv10662 Davidia involucrata HOM05D000759 ORTHO05D000574 4.7e-06 55.1 33 69.7
Eucgr.C01939 Eucalyptus grandis HOM05D000759 ORTHO05D000574 4.7e-06 55.1 33 66.7
Potri.006G185501 Populus trichocarpa HOM05D000759 ORTHO05D000574 4.7e-06 55.1 33 66.7
Potri.018G108000 Populus trichocarpa HOM05D000759 ORTHO05D000574 4.7e-06 55.1 33 66.7
GSVIVG01035957001 Vitis vinifera HOM05D000759 ORTHO05D000574 4.7e-06 55.1 33 66.7
Aqoxy2G00599 Aquilegia oxysepala HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 66.7
EL10Ac8g18854 Beta vulgaris HOM05D000759 ORTHO05D000574 6.1e-06 54.7 32 68.8
C09p69050 Brassica napus HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 72.7
BolC9t59648H Brassica oleracea HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 72.7
CDE01G0773 Ceratophyllum demersum HOM05D000759 ORTHO05D000574 6.1e-06 54.7 32 71.9
ECA234G3418 Erigeron canadensis HOM05D000759 ORTHO05D000574 6.1e-06 54.7 32 68.8
Migut.J01433 Erythranthe guttata HOM05D000759 ORTHO05D000574 6.1e-06 54.7 32 68.8
Glyma.14G102800 Glycine max HOM05D000759 ORTHO05D000574 6.1e-06 54.7 32 68.8
Lsat_1_v5_gn_5_91720 Lactuca sativa HOM05D000759 ORTHO05D000574 6.1e-06 54.7 32 68.8
Lj7A733G45 Lonicera japonica HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 66.7
Lalb_Chr08g0235421 Lupinus albus HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 69.7
Nn8g39868 Nelumbo nucifera HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 66.7
Peaxi162Scf00274g00115 Petunia axillaris HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 69.7
Potri.006G263700 Populus trichocarpa HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 69.7
Potri.015G061001 Populus trichocarpa HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 72.7
QL10p017923 Quercus lobata HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 69.7
Sabra06G0206200 Salix brachista HOM05D000759 ORTHO05D000574 6.1e-06 54.7 36 66.7
SGA_v2.0_scaffold313G48323 Striga asiatica HOM05D000759 ORTHO05D000574 6.1e-06 54.7 33 66.7
arahy.Tifrunner.gnm1.ann1.AWZ40H Arachis hypogaea HOM05D000759 ORTHO05D000574 8.0e-06 54.3 32 68.8
CSS0009449 Camellia sinensis var. sinensis HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 72.7
CSS0016396 Camellia sinensis var. sinensis HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 72.7
CAN.G587.13 Capsicum annuum HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 69.7
Cfa019279 Carpinus fangiana HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 69.7
ClCG05G016340 Citrullus lanatus HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 66.7
Haze_07655 Corylus avellana HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 69.7
MELO3C016965.2 Cucumis melo HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 66.7
MELO3C017195.2 Cucumis melo HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 66.7
CsaV3_4G036600 Cucumis sativus L. HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 66.7
Gohir.A07G070200 Gossypium hirsutum HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 66.7
Lalb_Chr14g0361781 Lupinus albus HOM05D000759 ORTHO05D000574 8.0e-06 54.3 32 68.8
Nitab4.5_0003021g0080 Nicotiana tabacum HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 69.7
Nitab4.5_0004771g0040 Nicotiana tabacum HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 69.7
Phvul.001G042000 Phaseolus vulgaris HOM05D000759 ORTHO05D000574 8.0e-06 54.3 32 68.8
Psat4g049080 Pisum sativum HOM05D000759 ORTHO05D000574 8.0e-06 54.3 32 68.8
RcHm_v2.0_Chr6g0299461 Rosa chinensis HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 63.6
Solyc12g010110.3 Solanum lycopersicum HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 66.7
Sopen12g004990 Solanum pennellii HOM05D000759 ORTHO05D000574 8.0e-06 54.3 33 66.7
TPR.G2022 Trifolium pratense HOM05D000759 ORTHO05D000574 8.0e-06 54.3 32 68.8
VMungo0647G1405 Vigna mungo HOM05D000759 ORTHO05D000574 8.0e-06 54.3 32 68.8


User provided reference genes

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