Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.0e-154 549.3 331 100.0
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 3.9e-153 545.0 331 99.1
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 2.6e-141 505.8 333 91.6
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.6e-138 496.5 333 93.1
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.7e-130 469.2 334 79.3
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 3.8e-124 448.7 332 83.1
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 6.6e-121 438.0 334 74.0
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 8.7e-121 437.6 331 74.3
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.1e-115 420.6 337 73.6
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 8.1e-111 404.4 334 73.1
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 3.1e-94 349.4 337 64.1
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 2.2e-92 343.2 334 65.3
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 9.7e-88 327.8 328 58.5
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 4.7e-74 282.3 193 84.5
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 7.0e-62 241.9 329 46.5
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.6e-61 240.7 334 46.7
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.1e-58 230.3 327 45.9
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 2.7e-58 229.9 366 43.4
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 5.2e-57 225.7 339 43.7
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.5e-56 224.2 300 47.0
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 3.4e-56 223.0 343 43.7
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 4.4e-56 222.6 334 43.1
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 9.8e-56 221.5 327 46.8
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.8e-55 219.9 340 42.9
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.1e-54 218.0 298 44.3
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.4e-54 217.6 334 43.7
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 2.4e-54 216.9 337 42.4
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 2.4e-54 216.9 327 42.2
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.2e-53 214.5 339 42.8
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.0e-53 213.8 336 41.7
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.0e-53 213.8 341 43.4
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 5.9e-53 212.2 343 42.0
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 7.7e-53 211.8 330 43.0
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.3e-52 211.1 301 44.5
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 2.9e-52 209.9 353 41.6
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 6.6e-52 208.8 338 44.1
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 8.6e-52 208.4 292 44.5
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 2.5e-51 206.8 292 44.5
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 4.3e-51 206.1 343 40.8
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.6e-51 205.7 289 45.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.2e-50 204.5 289 45.3
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.2e-50 204.5 334 42.5
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.2e-50 204.5 298 43.3
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 3.6e-50 203.0 282 45.7
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.1e-50 202.2 327 41.0
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 8.0e-50 201.8 288 44.8
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 3.0e-49 199.9 338 39.6
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.5e-48 197.6 293 44.4
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 5.7e-48 195.7 333 40.5
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 5.7e-48 195.7 336 39.0
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 7.5e-48 195.3 336 42.3
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 9.8e-48 194.9 305 43.0
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.9e-47 192.6 343 42.9
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 8.3e-47 191.8 345 41.7
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.4e-46 191.0 281 43.4
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 1.4e-46 191.0 344 38.1
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 2.4e-46 190.3 287 42.2
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.6e-45 187.6 347 39.5
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 3.5e-45 186.4 344 38.4
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 5.9e-45 185.7 321 39.9
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 5.9e-45 185.7 348 38.5
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 7.8e-45 185.3 343 39.4
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.0e-44 184.9 348 37.6
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.0e-44 184.9 287 41.8
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.7e-44 184.1 282 42.2
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.7e-44 184.1 345 39.4
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 8.6e-44 181.8 281 41.3
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.1e-43 181.4 343 39.7
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.9e-43 180.6 341 40.2
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.9e-43 180.6 347 38.9
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.9e-43 180.6 298 40.6
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 2.5e-43 180.3 332 36.4
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 5.6e-43 179.1 346 39.9
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.2e-42 177.9 334 38.9
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.2e-42 177.9 383 38.4
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 1.6e-42 177.6 257 44.4
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 3.6e-42 176.4 344 39.5
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 8.0e-42 175.3 349 36.4
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.0e-41 174.9 337 39.5
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 1.0e-41 174.9 297 39.7
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.8e-41 174.1 280 38.2
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.8e-41 174.1 340 37.6
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.8e-41 174.1 345 38.8
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.5e-40 171.0 344 39.0
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 2.0e-40 170.6 293 38.9
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.6e-40 170.2 344 38.7
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 3.4e-40 169.9 335 39.4
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.3e-39 167.9 253 43.9
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.3e-39 167.9 326 34.4
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 2.2e-39 167.2 334 36.8
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 2.2e-39 167.2 235 47.7
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 4.9e-39 166.0 234 43.6
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.4e-38 164.5 342 36.5
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 1.4e-38 164.5 343 37.3
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.4e-38 163.7 506 30.6
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.4e-38 163.7 317 37.5
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 9.2e-38 161.8 345 37.1
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 9.2e-38 161.8 341 35.8
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.2e-37 161.4 285 40.4
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 2.0e-37 160.6 340 35.6
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 2.7e-37 160.2 334 38.0
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 4.6e-37 159.5 347 34.9
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.7e-36 157.5 284 38.0
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.3e-36 157.1 296 39.2
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 3.3e-35 153.3 342 37.7
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 7.3e-35 152.1 346 36.1
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 2.1e-34 150.6 285 39.3
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.8e-33 147.5 340 35.9
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.3e-33 147.1 283 38.2
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 4.0e-33 146.4 283 40.3
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 6.8e-33 145.6 333 37.2
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.5e-32 144.4 286 37.1
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.0e-32 144.1 278 41.4
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 4.4e-32 142.9 291 35.7
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.9e-31 140.2 283 38.2
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 4.9e-31 139.4 342 34.5
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 7.1e-30 135.6 423 29.1
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 9.2e-30 135.2 301 38.9
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.6e-29 134.4 277 37.9
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 3.5e-29 133.3 288 35.1
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.6e-29 132.9 251 37.8
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 2.3e-28 130.6 350 34.3
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.5e-27 127.9 258 36.8
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 9.5e-27 125.2 285 35.1
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.0e-24 117.5 281 35.2
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.4e-22 111.3 118 55.9
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 2.4e-22 110.5 281 34.2
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 1.6e-21 107.8 115 56.5
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 7.8e-21 105.5 113 56.6
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.3e-20 104.0 286 33.2
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 6.2e-18 95.9 231 31.6
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.2e-16 91.7 90 51.1
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.4e-16 90.1 129 46.5
BcaB05g21579 Brassica carinata HOM05D005253 ORTHO05D006058 3.8e-15 86.7 114 54.4
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 7.8e-13 79.0 121 41.3
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 5.1e-12 76.3 335 25.4
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 1.6e-10 71.2 87 44.8
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 6.2e-10 69.3 89 44.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.1e-09 68.6 313 28.1
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.8e-09 67.8 253 26.5
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 5.3e-09 66.2 100 39.0
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 9.0e-09 65.5 259 25.9
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 2.6e-08 63.9 98 38.8
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.4e-08 63.5 111 35.1
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 6.4e-07 59.3 85 40.0
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 3.2e-06 57.0 105 44.8


User provided reference genes

Program Settings