Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 3.0e-116 422.2 261 100.0
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 2.5e-115 419.1 261 99.2
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 4.0e-105 385.2 263 80.2
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 4.0e-105 385.2 263 80.2
BcaB08g37272 Brassica carinata HOM05D006433 ORTHO05D005382 3.2e-102 375.6 261 77.0
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 9.7e-83 310.8 258 66.3
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 1.1e-75 287.3 262 63.4
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 1.3e-74 283.9 264 62.9
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 1.2e-72 277.3 265 61.9
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 3.6e-69 265.8 264 59.8
BcaNung05094 Brassica carinata HOM05D006433 ORTHO05D005382 6.1e-69 265.0 262 62.2
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 6.5e-63 245.0 269 56.9
A03p03690 Brassica napus HOM05D006433 ORTHO05D005382 2.3e-60 236.5 234 62.8
C03p04180 Brassica napus HOM05D006433 ORTHO05D005382 5.2e-60 235.3 234 62.4
BraA03t09717Z Brassica rapa HOM05D006433 ORTHO05D005382 5.2e-60 235.3 234 62.8
BcaB01g05621 Brassica carinata HOM05D006433 ORTHO05D005382 4.8e-58 228.8 234 61.1
BolC3t12950H Brassica oleracea HOM05D006433 ORTHO05D005382 4.8e-58 228.8 234 61.1
Aa31LG3G18330 Aethionema arabicum HOM05D006433 ORTHO05D005382 1.5e-51 207.2 259 50.6
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 6.1e-37 158.7 278 42.1
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 3.0e-36 156.4 268 41.8
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 3.7e-34 149.4 278 40.6
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 4.1e-33 146.0 273 39.9
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 3.9e-31 139.4 264 39.4
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 5.0e-31 139.0 267 41.6
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 1.5e-30 137.5 275 38.9
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 4.3e-30 136.0 259 39.8
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 2.3e-28 130.2 261 37.2
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 2.0e-27 127.1 261 37.5
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 3.7e-26 122.9 274 36.1
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 3.2e-25 119.8 93 65.6
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 2.9e-18 96.7 83 55.4
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 3.7e-18 96.3 302 30.1
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 4.9e-18 95.9 83 56.6
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 1.1e-17 94.7 279 30.8
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 2.4e-17 93.6 90 55.6
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 3.2e-17 93.2 282 31.2
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 3.2e-17 93.2 89 55.1
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 9.2e-17 91.7 81 56.8
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 1.2e-16 91.3 94 53.2
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 2.1e-16 90.5 285 28.1
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 2.7e-16 90.1 82 54.9
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 4.6e-16 89.4 94 52.1
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 6.0e-16 89.0 81 55.6
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 1.0e-15 88.2 80 55.0
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 1.7e-15 87.4 84 48.8
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 3.9e-15 86.3 85 51.8
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 5.1e-15 85.9 84 54.8
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 6.6e-15 85.5 88 51.1
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 6.6e-15 85.5 83 51.8
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 8.6e-15 85.1 81 51.9
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 8.6e-15 85.1 282 28.7
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 8.6e-15 85.1 83 51.8
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 1.1e-14 84.7 329 27.1
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 1.1e-14 84.7 82 51.2
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 1.5e-14 84.3 85 51.8
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 1.5e-14 84.3 86 50.0
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 1.5e-14 84.3 84 52.4
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 1.9e-14 84.0 306 28.4
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 1.9e-14 84.0 86 53.5
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 2.5e-14 83.6 85 49.4
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 2.5e-14 83.6 83 47.0
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 4.3e-14 82.8 80 55.0
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 5.6e-14 82.4 93 46.2
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 5.6e-14 82.4 93 46.2
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 5.6e-14 82.4 89 48.3
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 7.3e-14 82.0 91 51.6
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 7.3e-14 82.0 80 52.5
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 9.5e-14 81.6 278 29.5
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 9.5e-14 81.6 82 52.4
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 9.5e-14 81.6 86 48.8
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 1.2e-13 81.3 82 51.2
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 1.2e-13 81.3 87 52.9
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 1.2e-13 81.3 85 47.1
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 1.2e-13 81.3 84 47.6
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 1.6e-13 80.9 278 28.8
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 2.1e-13 80.5 93 45.2
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 3.6e-13 79.7 88 47.7
DCAR_002584 Daucus carota HOM05D006433 ORTHO05D005382 3.6e-13 79.7 83 48.2
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 3.6e-13 79.7 82 50.0
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 3.6e-13 79.7 86 47.7
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 4.7e-13 79.3 84 50.0
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 6.2e-13 79.0 81 48.1
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.1e-12 78.2 90 44.4
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 1.1e-12 78.2 83 48.2
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 1.1e-12 78.2 84 50.0
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 1.4e-12 77.8 88 48.9
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 2.3e-12 77.0 299 24.4
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 3.1e-12 76.6 330 25.8
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 3.1e-12 76.6 88 47.7
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 3.1e-12 76.6 85 51.8
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 4.0e-12 76.3 84 47.6
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 5.2e-12 75.9 88 46.6
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 1.2e-11 74.7 83 47.0
Thhalv10005437m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 2.6e-11 73.6 122 45.1
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 3.4e-11 73.2 81 45.7
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 1.3e-10 71.2 84 42.9
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 8.4e-10 68.6 82 45.1
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 8.4e-10 68.6 82 46.3
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 1.1e-09 68.2 84 40.5
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 1.4e-09 67.8 81 37.0
SalBow2G0414 Salvia bowleyana HOM05D006433 ORTHO05D005382 1.2e-08 64.7 85 42.4
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 7.8e-08 62.0 76 38.2
AUR62017700 Chenopodium quinoa HOM05D006433 ORTHO05D005382 1.0e-07 61.6 85 40.0
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 1.0e-07 61.6 81 37.0
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 1.7e-07 60.8 91 34.1
Oeu063832.1 Olea europaea HOM05D006433 ORTHO05D005382 2.3e-07 60.5 83 41.0
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 2.3e-07 60.5 78 39.7
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 3.0e-07 60.1 84 41.7
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 3.0e-07 60.1 79 32.9
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 3.0e-07 60.1 79 32.9
Sc06g0007710 Simmondsia chinensis HOM05D006433 ORTHO05D005382 3.0e-07 60.1 86 44.2
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 1.5e-06 57.8 77 37.7
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 1.5e-06 57.8 78 38.5
MSTRG.13683 Avicennia marina HOM05D006433 ORTHO05D005382 2.5e-06 57.0 82 35.4
Gohir.D01G056900 Gossypium hirsutum HOM05D013385 ORTHO05D005382 7.3e-06 55.5 73 34.2
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 7.3e-06 55.5 84 34.5
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 7.3e-06 55.5 76 35.5
Gorai.002G077300 Gossypium raimondii HOM05D013385 ORTHO05D005382 9.6e-06 55.1 73 34.2
Oeu013185.1 Olea europaea HOM05D006433 ORTHO05D005382 9.6e-06 55.1 83 38.6


User provided reference genes

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