Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1218.8 597 100.0
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1205.3 598 99.2
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1187.2 598 97.3
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1164.1 597 96.1
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1152.1 601 95.0
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 0.0e+00 1127.9 597 92.8
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 0.0e+00 1105.5 597 89.6
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 0.0e+00 1100.1 597 90.1
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 0.0e+00 1097.0 599 90.2
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.1e-302 1042.7 603 87.4
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 2.0e-301 1038.5 593 87.5
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 7.9e-298 1026.5 602 83.9
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 6.9e-294 1013.4 605 82.6
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 3.8e-292 1007.7 601 83.0
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.2e-291 1004.2 603 83.4
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 4.2e-291 1004.2 605 82.0
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 2.7e-290 1001.5 601 83.0
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 2.7e-290 1001.5 603 82.3
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 8.7e-289 996.5 603 82.4
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.5e-288 995.7 602 82.1
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 7.4e-288 993.4 574 84.0
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 9.7e-288 993.0 602 82.2
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 9.7e-288 993.0 603 82.1
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 1.6e-287 992.3 601 82.5
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 2.2e-287 991.9 520 91.7
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 4.8e-287 990.7 604 81.5
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 6.3e-287 990.3 601 82.5
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 8.2e-287 989.9 605 81.8
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 1.1e-286 989.6 601 82.4
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 3.4e-285 984.6 602 81.6
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.5e-283 978.4 893 60.5
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 7.9e-282 973.4 578 82.5
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.3e-271 939.5 606 75.7
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.8e-271 938.3 573 79.4
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 6.3e-271 937.2 573 79.4
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 6.3e-271 937.2 578 78.5
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 1.1e-270 936.4 573 79.1
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.4e-270 936.0 599 76.6
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.8e-270 935.6 573 79.2
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 4.1e-270 934.5 600 76.3
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.1e-270 933.3 571 78.8
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.6e-269 931.8 574 78.6
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 5.9e-269 930.6 579 79.1
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 7.7e-269 930.2 574 78.4
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 7.7e-269 930.2 574 78.4
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 7.7e-269 930.2 598 76.6
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 8.5e-268 926.8 601 76.2
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 1.9e-267 925.6 602 76.6
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 3.2e-267 924.9 568 78.0
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 4.2e-267 924.5 575 78.1
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 4.2e-267 924.5 600 77.0
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 4.2e-267 924.5 583 77.0
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 5.5e-267 924.1 600 76.2
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 9.4e-267 923.3 602 76.2
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.6e-266 922.5 580 77.6
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 2.7e-266 921.8 599 76.5
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 6.1e-266 920.6 585 76.4
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 6.1e-266 920.6 606 76.1
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 8.0e-266 920.2 599 75.0
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 1.2e-264 916.4 571 78.6
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 2.0e-264 915.6 574 78.4
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 2.6e-264 915.2 601 75.2
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 3.3e-264 914.8 596 75.3
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 5.7e-264 914.1 580 77.2
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 7.5e-264 913.7 589 75.6
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 9.7e-264 913.3 574 77.4
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.3e-263 912.9 598 75.3
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 2.2e-263 912.1 599 74.6
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 2.8e-263 911.8 597 75.4
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 3.7e-263 911.4 605 74.2
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 6.3e-263 910.6 603 74.6
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 6.3e-263 910.6 611 73.6
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 8.2e-263 910.2 573 76.3
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 8.2e-263 910.2 622 73.6
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 8.2e-263 910.2 600 75.5
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.4e-262 909.4 622 73.5
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.4e-262 909.4 600 74.7
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 1.4e-262 909.4 604 74.7
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 3.1e-262 908.3 600 74.7
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 5.3e-262 907.5 580 77.1
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 7.0e-262 907.1 594 75.6
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 9.1e-262 906.7 602 74.9
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 9.1e-262 906.7 603 74.1
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.2e-261 906.4 581 75.2
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 1.2e-261 906.4 579 76.9
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.7e-261 905.2 622 73.3
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 2.7e-261 905.2 580 77.4
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 3.5e-261 904.8 601 73.4
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.7e-260 902.5 575 77.4
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 1.7e-260 902.5 604 74.2
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.2e-260 902.1 557 77.9
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 2.2e-260 902.1 599 73.3
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 2.9e-260 901.7 575 76.5
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 6.5e-260 900.6 576 76.6
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 6.5e-260 900.6 573 75.9
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 8.5e-260 900.2 592 74.3
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 1.5e-259 899.4 579 76.0
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 3.2e-259 898.3 605 73.2
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 9.4e-259 896.7 598 73.4
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.7e-258 895.2 557 78.6
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 4.7e-258 894.4 619 73.0
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 1.4e-257 892.9 587 75.6
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 4.0e-257 891.3 594 74.4
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 5.2e-257 891.0 574 76.3
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 5.2e-257 891.0 578 74.4
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 4.4e-256 887.9 599 73.1
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 1.7e-255 885.9 540 78.0
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 6.3e-255 884.0 572 74.3
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.1e-254 883.2 706 64.3
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 2.4e-254 882.1 602 72.6
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 4.1e-254 881.3 623 70.8
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 9.1e-254 880.2 607 71.2
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.6e-253 879.4 608 71.7
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.0e-253 879.0 603 71.6
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.5e-251 872.8 599 72.6
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 2.1e-250 869.0 551 77.1
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 5.2e-249 864.4 574 74.0
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 6.3e-247 857.4 582 73.5
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.8e-241 839.3 640 68.1
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 1.3e-239 833.2 602 70.6
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 2.3e-236 822.4 522 76.6
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 1.9e-230 802.7 548 69.9
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 3.9e-228 795.0 593 67.1
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.4e-225 786.6 499 77.0
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 5.2e-225 784.6 938 48.6
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 3.5e-213 745.3 605 61.7
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 1.6e-205 719.9 576 64.2
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.5e-205 718.8 571 64.1
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.9e-199 699.1 434 82.9
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 1.1e-195 687.2 400 82.5
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 4.3e-195 685.3 544 65.8
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 7.1e-190 667.9 567 57.3
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.8e-186 656.0 472 68.4
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 1.6e-165 587.0 340 85.9
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.4e-163 578.9 444 72.1
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 3.5e-152 542.7 417 67.4
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 9.4e-150 534.6 576 48.6
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 8.6e-135 485.0 307 77.5
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 6.2e-117 425.6 350 57.7
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 1.3e-103 381.3 455 43.5
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 6.2e-101 372.5 561 37.4
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.1e-100 371.7 470 43.0
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.7e-93 346.3 223 77.6
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 5.1e-87 326.2 262 65.6
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 2.7e-80 303.9 176 82.4
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 5.1e-79 299.7 611 33.7
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 9.0e-76 288.9 233 62.7
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 3.3e-70 270.4 257 56.8
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 3.3e-70 270.4 257 56.8
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 4.9e-66 256.5 369 36.3
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.2e-64 251.9 169 71.6
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.3e-63 248.4 162 73.5
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.1e-46 192.2 228 49.1
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.1e-44 185.7 109 86.2
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 2.5e-41 174.5 158 64.6
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 4.2e-41 173.7 154 65.6
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 6.3e-29 133.3 122 54.1
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.8e-28 131.7 72 84.7
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.8e-16 91.3 105 52.4
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.0e-15 89.4 49 75.5
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.0e-15 89.4 49 75.5
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 5.2e-15 87.0 46 82.6
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 2.8e-13 81.3 43 79.1
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 1.2e-11 75.9 48 66.7
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 4.5e-11 73.9 77 58.4
CARHR148430 Cardamine hirsuta HOM05D004337 ORTHO05D116339 6.8e-07 60.1 51 66.7


User provided reference genes

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