Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 2.6e-283 978.0 489 100.0
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 3.2e-281 971.1 489 99.4
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.2e-280 969.1 488 99.4
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 4.7e-280 967.2 488 99.2
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.0e-279 966.1 489 98.6
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 2.3e-279 964.9 489 98.6
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 3.0e-279 964.5 489 98.6
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 6.7e-279 963.4 489 98.4
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 6.7e-279 963.4 489 98.4
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 3.3e-278 961.1 489 98.8
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 4.4e-278 960.7 489 98.2
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 7.4e-278 959.9 489 97.8
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 7.4e-278 959.9 490 96.9
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 2.8e-277 958.0 489 97.1
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 7.7e-275 949.9 486 97.5
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.3e-274 949.1 489 97.3
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.9e-273 945.3 487 97.3
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 4.7e-272 940.6 489 94.9
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 7.7e-267 923.3 488 94.1
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 3.0e-263 911.4 489 90.6
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 8.8e-263 909.8 486 91.6
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 8.8e-263 909.8 488 92.0
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.2e-262 909.4 489 90.4
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 1.5e-262 909.1 487 91.4
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.5e-262 909.1 487 91.6
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.5e-262 909.1 489 90.4
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.5e-262 909.1 489 90.8
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 2.6e-262 908.3 488 91.4
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 3.4e-262 907.9 486 91.4
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 4.4e-262 907.5 489 90.2
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 7.5e-262 906.7 489 89.8
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 7.5e-262 906.7 489 92.4
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 9.7e-262 906.4 489 89.2
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 9.7e-262 906.4 489 90.2
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 9.7e-262 906.4 486 90.7
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 1.3e-261 906.0 488 91.4
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.3e-261 906.0 489 91.4
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.3e-261 906.0 488 91.6
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.7e-261 905.6 489 91.6
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.7e-261 905.6 489 91.2
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 2.8e-261 904.8 487 91.0
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.7e-261 904.4 489 90.2
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 3.7e-261 904.4 489 89.8
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 4.8e-261 904.0 486 90.9
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 6.3e-261 903.7 486 90.7
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 6.3e-261 903.7 489 91.6
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 8.3e-261 903.3 489 89.8
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 8.3e-261 903.3 489 88.5
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 8.3e-261 903.3 489 90.0
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 8.3e-261 903.3 489 90.8
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 8.3e-261 903.3 488 91.6
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 8.3e-261 903.3 489 90.0
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.1e-260 902.9 487 90.8
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 1.4e-260 902.5 486 90.5
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 1.4e-260 902.5 489 89.8
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.4e-260 902.5 488 90.2
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 1.4e-260 902.5 488 92.0
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 2.4e-260 901.7 488 91.4
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 3.1e-260 901.4 488 90.4
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 3.1e-260 901.4 488 90.4
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 4.1e-260 901.0 486 90.7
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 5.3e-260 900.6 487 91.0
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 5.3e-260 900.6 488 91.2
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 7.0e-260 900.2 486 90.5
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 9.1e-260 899.8 482 90.9
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 9.1e-260 899.8 489 91.0
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.2e-259 899.4 488 91.0
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 1.2e-259 899.4 488 90.4
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.6e-259 899.0 489 89.4
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.6e-259 899.0 489 91.0
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 2.7e-259 898.3 489 91.0
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 3.5e-259 897.9 488 89.5
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 4.5e-259 897.5 488 91.8
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 4.5e-259 897.5 492 90.0
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 4.5e-259 897.5 489 88.1
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 7.7e-259 896.7 486 90.7
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 7.7e-259 896.7 488 90.6
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.0e-258 896.3 485 90.1
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.0e-258 896.3 489 89.8
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.7e-258 895.6 488 89.5
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.7e-258 895.6 489 89.6
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 2.2e-258 895.2 487 89.5
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 2.2e-258 895.2 467 94.9
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 2.9e-258 894.8 486 91.2
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 2.9e-258 894.8 489 89.0
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 2.9e-258 894.8 489 89.8
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 2.9e-258 894.8 493 91.1
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 6.5e-258 893.6 489 88.3
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 8.5e-258 893.3 489 89.2
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 1.5e-257 892.5 488 90.4
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 1.5e-257 892.5 482 90.2
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.5e-257 892.5 487 89.9
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.9e-257 892.1 488 89.5
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 1.9e-257 892.1 481 90.9
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 7.2e-257 890.2 486 89.7
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 9.4e-257 889.8 467 94.4
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 1.6e-256 889.0 467 94.9
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 2.1e-256 888.6 479 91.2
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 2.7e-256 888.3 486 89.5
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 4.7e-256 887.5 488 89.1
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 8.0e-256 886.7 485 89.7
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 5.2e-255 884.0 483 89.9
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 5.2e-255 884.0 485 89.3
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 8.8e-255 883.2 474 89.9
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 4.4e-254 880.9 481 90.0
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 9.8e-254 879.8 437 94.3
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.5e-249 865.9 481 88.6
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.9e-249 865.5 462 92.2
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 1.0e-247 859.8 462 92.6
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.4e-247 859.4 436 92.7
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 8.9e-247 856.7 436 92.0
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.5e-246 855.9 474 88.6
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 4.1e-244 847.8 439 91.1
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 5.4e-244 847.4 433 90.5
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 4.7e-240 834.3 431 89.3
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 3.1e-239 831.6 407 96.3
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 2.0e-238 828.9 434 88.7
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.1e-236 823.2 408 95.1
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 9.2e-236 820.1 406 94.6
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 2.7e-235 818.5 405 94.6
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 7.8e-235 817.0 407 94.6
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 1.3e-229 799.7 433 86.8
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 3.7e-221 771.5 384 94.5
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 4.9e-221 771.2 488 79.1
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 7.1e-220 767.3 427 83.4
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 2.1e-219 765.8 436 82.3
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 2.3e-218 762.3 421 82.7
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 2.6e-206 722.2 378 90.7
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 2.7e-203 712.2 483 77.0
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.3e-202 709.1 395 87.8
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 2.0e-190 669.5 371 89.8
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.8e-189 665.2 346 91.3
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 8.7e-186 654.1 395 75.7
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.9e-179 630.9 488 70.1
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 5.7e-177 624.8 315 93.7
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.5e-169 600.1 489 67.9
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.0e-169 599.7 488 67.8
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.1e-167 592.0 488 67.6
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 5.5e-164 581.6 282 96.5
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.0e-147 524.6 279 88.9
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 7.2e-140 501.5 351 72.1
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.2e-126 457.6 275 76.4
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 8.9e-114 414.8 203 96.1
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.4e-98 363.6 180 92.2
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.9e-95 354.0 191 86.4
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.1e-94 350.5 172 97.1
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.4e-90 337.0 171 92.4
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.2e-79 300.1 487 41.5
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 8.1e-75 285.4 146 91.1
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 1.1e-68 265.0 146 87.0
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 2.6e-65 253.8 166 81.9
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.3e-64 251.5 127 95.3
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 1.9e-63 247.7 127 88.2
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.4e-58 231.5 149 85.2
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.8e-53 214.5 259 43.6
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 7.4e-52 209.1 100 96.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.5e-49 201.4 102 93.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 5.7e-44 183.0 129 76.0
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 5.2e-37 159.8 102 78.4
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 9.7e-36 155.6 77 98.7
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 9.7e-36 155.6 77 98.7
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.0e-33 147.9 110 67.3
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.0e-29 135.6 69 98.6
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.2e-29 133.3 71 91.5
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 3.4e-28 130.6 197 37.1
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-27 127.9 68 89.7
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.1e-26 124.0 65 89.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.1e-26 124.0 65 89.2
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.1e-26 122.5 66 89.4
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.0e-25 121.3 66 87.9
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.6e-22 110.5 83 66.3
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.0e-21 107.5 67 70.1
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 2.8e-19 100.9 67 68.7
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 6.6e-16 89.7 168 35.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 4.0e-13 80.5 71 56.3
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 8.9e-13 79.3 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 2.0e-12 78.2 72 56.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 1.6e-09 68.6 61 57.4
BolC2t06325H Brassica oleracea HOM05D003867 ORTHO05D105722 4.3e-07 60.5 36 83.3


User provided reference genes

Program Settings