Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 0.0e+00 1358.6 718 100.0
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 0.0e+00 1316.2 718 96.5
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 0.0e+00 1313.9 719 97.2
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 0.0e+00 1298.5 718 95.3
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 0.0e+00 1224.2 719 91.4
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 0.0e+00 1119.8 729 81.8
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 0.0e+00 1113.2 731 82.6
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 0.0e+00 1106.7 736 80.3
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 0.0e+00 1102.0 728 81.3
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 0.0e+00 1098.6 728 79.5
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 0.0e+00 1093.6 728 79.3
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 0.0e+00 1092.8 729 80.5
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 0.0e+00 1075.8 728 79.5
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 9.8e-312 1072.8 728 79.5
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.7e-291 1005.7 777 70.8
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 2.1e-257 892.5 733 65.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.1e-242 843.6 513 85.2
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 9.1e-216 754.2 744 55.0
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 5.0e-206 721.8 739 53.2
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.6e-204 716.8 723 54.1
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 4.7e-204 715.3 733 53.5
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 4.7e-204 715.3 747 53.4
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.8e-200 703.4 739 52.6
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 3.8e-198 695.7 742 52.6
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 8.5e-198 694.5 743 52.2
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 2.5e-197 693.0 725 53.4
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.2e-197 692.6 734 51.9
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 6.1e-196 688.3 733 52.1
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.3e-195 686.4 735 52.2
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 5.2e-195 685.3 723 52.0
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.2e-194 684.1 723 51.3
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 4.4e-194 682.2 723 51.3
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 2.8e-193 679.5 718 52.4
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 3.1e-192 676.0 744 52.2
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 5.4e-192 675.2 733 50.9
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 3.5e-191 672.5 739 51.8
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 2.3e-190 669.8 722 51.2
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 2.8e-188 662.9 733 50.3
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 8.0e-188 661.4 739 50.9
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.8e-187 660.2 749 51.3
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 4.0e-187 659.1 730 52.1
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.2e-186 657.5 733 49.9
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.2e-186 657.5 730 51.1
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 2.0e-186 656.8 731 49.9
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 2.6e-186 656.4 735 50.1
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 4.4e-186 655.6 724 50.8
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 7.5e-186 654.8 751 51.3
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.9e-185 652.9 719 51.7
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 3.7e-185 652.5 719 50.9
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.4e-184 649.8 722 50.4
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 4.1e-184 649.0 721 50.2
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 4.1e-184 649.0 732 48.8
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 2.7e-183 646.4 719 51.0
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 6.6e-182 641.7 720 50.3
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 8.6e-182 641.3 722 49.9
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 4.3e-181 639.0 728 50.4
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 5.6e-181 638.6 725 50.1
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 8.0e-180 634.8 732 49.2
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.0e-179 634.4 752 51.3
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.1e-179 632.9 721 49.5
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 5.2e-179 632.1 719 49.1
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 8.9e-179 631.3 737 50.2
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 7.5e-178 628.2 724 49.7
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.3e-177 627.5 726 48.5
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.9e-177 626.3 719 48.7
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.7e-177 625.9 719 49.0
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.4e-176 624.0 721 49.0
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.9e-176 623.6 719 49.1
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.2e-175 620.9 746 48.5
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 1.6e-175 620.5 718 48.6
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 2.0e-175 620.2 726 48.5
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 7.8e-175 618.2 729 49.2
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 3.9e-174 615.9 731 48.4
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.3e-173 612.8 746 48.1
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.8e-172 609.8 763 46.7
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.1e-171 607.8 747 48.5
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 2.6e-170 603.2 724 47.0
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 4.4e-170 602.4 729 49.0
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 2.4e-168 596.7 719 47.0
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.7e-166 590.5 731 51.4
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 9.5e-165 584.7 708 48.0
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.2e-164 584.3 719 46.7
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 4.7e-164 582.4 731 50.9
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 8.1e-164 581.6 734 47.0
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 8.1e-164 581.6 711 46.1
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 2.3e-163 580.1 723 46.1
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.0e-163 579.3 718 45.7
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 3.4e-162 576.2 637 50.9
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 3.4e-162 576.2 724 45.0
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 5.8e-162 575.5 678 49.1
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.2e-161 573.5 731 50.6
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 2.9e-161 573.2 736 50.4
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.4e-160 570.1 732 44.9
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.0e-158 564.7 755 44.4
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 2.1e-156 557.0 682 46.8
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 2.1e-156 557.0 725 45.4
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 4.0e-155 552.7 640 49.5
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.2e-154 551.2 636 48.9
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 2.0e-154 550.4 752 45.1
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 3.8e-153 546.2 730 44.5
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 2.4e-152 543.5 647 48.4
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.2e-151 541.2 718 43.2
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 9.6e-149 531.6 659 46.7
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 6.9e-147 525.4 716 43.0
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 4.2e-144 516.2 684 43.9
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 6.0e-143 512.3 719 42.8
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.3e-142 511.1 717 43.9
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 2.4e-136 490.3 569 50.3
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 5.5e-136 489.2 638 47.5
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 3.9e-134 483.0 820 40.6
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.9e-133 480.7 640 43.6
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.2e-130 471.5 545 49.5
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 5.5e-128 462.6 688 41.0
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 6.3e-124 449.1 770 37.8
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.2e-122 444.9 667 41.1
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.9e-105 387.1 724 37.3
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 9.1e-99 365.5 816 32.8
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 5.9e-98 362.8 754 36.9
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 7.7e-98 362.5 774 35.0
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.5e-96 358.2 737 35.1
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 6.3e-76 289.7 550 36.0
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.1e-71 274.6 514 36.2
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 6.1e-71 273.1 694 31.1
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.3e-70 271.2 466 36.9
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.9e-64 251.5 127 94.5
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.0e-54 217.2 449 33.2
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 3.0e-49 201.1 683 26.5
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.6e-39 167.5 225 42.7
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.2e-38 163.7 151 53.6
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 2.6e-37 161.4 214 43.9
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.7e-34 151.4 148 51.4
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 1.5e-32 145.6 95 69.5
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.5e-32 145.6 312 30.8
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 2.4e-30 138.3 98 71.4
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.6e-29 134.8 211 38.4
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 4.9e-28 130.6 95 67.4
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 3.5e-26 124.4 130 50.0
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 6.0e-18 97.1 129 39.5
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 2.4e-14 85.1 85 51.8
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 6.9e-14 83.6 123 37.4
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 9.0e-14 83.2 95 49.5
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 6.5e-12 77.0 433 26.8
Rhsim02G0134900 Rhododendron simsii HOM05D001439 ORTHO05D002726 1.1e-06 59.7 148 31.8
unitig_27.g24975 Utricularia gibba HOM05D001439 ORTHO05D002726 2.4e-06 58.5 81 43.2
Ciclev10014022m.g Citrus clementina HOM05D001439 ORTHO05D002726 3.1e-06 58.2 129 32.6
Medtr4g088375 Medicago truncatula HOM05D001439 ORTHO05D002726 3.1e-06 58.2 92 40.2
Nn1g06413 Nelumbo nucifera HOM05D001439 ORTHO05D002726 3.1e-06 58.2 82 45.1
Ca_18589_v3 Cicer arietinum L. HOM05D001439 ORTHO05D002726 4.1e-06 57.8 107 38.3
TAR626G0101 Trochodendron aralioides HOM05D001439 ORTHO05D002726 4.1e-06 57.8 92 38.0
HanXRQChr15g0469531 Helianthus annuus HOM05D001439 ORTHO05D002726 5.3e-06 57.4 140 33.6
Potri.017G016200 Populus trichocarpa HOM05D001439 ORTHO05D002726 5.3e-06 57.4 93 40.9
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 5.3e-06 57.4 110 36.4
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 6.9e-06 57.0 256 27.7
QL08p040227 Quercus lobata HOM05D001439 ORTHO05D002726 9.0e-06 56.6 100 39.0
Sabra07G0109800 Salix brachista HOM05D001439 ORTHO05D002726 9.0e-06 56.6 93 38.7


User provided reference genes

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