Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 1.6e-80 302.8 160 100.0
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 1.6e-80 302.8 160 100.0
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 1.6e-80 302.8 160 100.0
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 5.9e-75 284.3 164 95.1
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 1.4e-71 273.1 153 94.8
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 1.9e-65 252.7 153 89.5
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 5.1e-50 201.4 111 94.6
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 2.5e-49 199.1 109 95.4
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 4.3e-49 198.4 107 96.3
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 2.1e-48 196.1 107 95.3
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 1.4e-47 193.4 112 92.0
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 1.4e-47 193.4 107 93.5
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 2.4e-47 192.6 109 90.8
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 4.0e-47 191.8 107 93.5
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 6.8e-47 191.0 109 89.9
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 3.4e-46 188.7 109 89.9
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 5.8e-46 188.0 108 93.5
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 5.8e-46 188.0 108 93.5
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 1.6e-43 179.9 109 84.4
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 1.2e-35 153.7 109 73.4
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 1.5e-33 146.7 106 74.5
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 2.5e-25 119.4 111 57.7
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 1.6e-24 116.7 110 51.8
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 4.8e-24 115.2 108 55.6
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 8.1e-24 114.4 102 57.8
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 8.1e-24 114.4 88 60.2
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.1e-23 114.0 97 54.6
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 1.1e-23 114.0 89 60.7
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 1.4e-23 113.6 93 58.1
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 1.8e-23 113.2 99 58.6
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 1.8e-23 113.2 105 56.2
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 4.0e-23 112.1 93 58.1
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 4.0e-23 112.1 99 57.6
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 5.3e-23 111.7 93 57.0
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 5.3e-23 111.7 93 57.0
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 5.3e-23 111.7 104 54.8
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 5.3e-23 111.7 107 54.2
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 1.2e-22 110.5 83 62.7
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 1.5e-22 110.2 111 52.3
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 1.5e-22 110.2 111 52.3
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 1.5e-22 110.2 93 57.0
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 2.0e-22 109.8 92 55.4
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 2.6e-22 109.4 108 54.6
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 3.4e-22 109.0 83 61.4
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 4.5e-22 108.6 96 57.3
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 5.8e-22 108.2 83 61.4
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 5.8e-22 108.2 107 53.3
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 7.6e-22 107.8 107 53.3
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 7.6e-22 107.8 111 50.5
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 7.6e-22 107.8 96 57.3
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 9.9e-22 107.5 117 49.6
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 9.9e-22 107.5 81 64.2
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 1.3e-21 107.1 103 52.4
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 1.3e-21 107.1 83 60.2
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 1.3e-21 107.1 93 58.1
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 1.3e-21 107.1 125 49.6
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 2.2e-21 106.3 122 47.5
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 2.2e-21 106.3 139 45.3
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 2.2e-21 106.3 102 52.9
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 2.9e-21 105.9 84 60.7
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 2.9e-21 105.9 92 57.6
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 3.8e-21 105.5 91 56.0
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 3.8e-21 105.5 101 53.5
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 4.9e-21 105.1 101 55.4
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 4.9e-21 105.1 97 56.7
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 4.9e-21 105.1 92 57.6
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 6.4e-21 104.8 96 56.2
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 8.4e-21 104.4 89 58.4
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 8.4e-21 104.4 130 47.7
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 8.4e-21 104.4 133 46.6
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.1e-20 104.0 85 58.8
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 1.1e-20 104.0 89 58.4
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 1.4e-20 103.6 112 49.1
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 1.4e-20 103.6 86 58.1
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.9e-20 103.2 91 53.8
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 1.9e-20 103.2 107 53.3
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 2.5e-20 102.8 104 52.9
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 3.2e-20 102.4 99 53.5
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 5.5e-20 101.7 84 59.5
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 5.5e-20 101.7 101 51.5
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 5.5e-20 101.7 134 44.8
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 7.1e-20 101.3 101 51.5
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 7.1e-20 101.3 102 49.0
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 7.1e-20 101.3 83 61.4
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 9.3e-20 100.9 97 53.6
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 9.3e-20 100.9 100 52.0
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.2e-19 100.5 102 54.9
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 1.6e-19 100.1 87 52.9
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 1.6e-19 100.1 105 51.4
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 3.5e-19 99.0 85 56.5
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 4.6e-19 98.6 74 59.5
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 4.6e-19 98.6 74 59.5
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 6.0e-19 98.2 86 55.8
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 7.9e-19 97.8 102 52.9
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 7.9e-19 97.8 126 47.6
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 7.9e-19 97.8 66 66.7
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 1.0e-18 97.4 84 57.1
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 1.3e-18 97.1 66 62.1
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 1.3e-18 97.1 106 51.9
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 2.3e-18 96.3 78 57.7
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.3e-18 96.3 84 57.1
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 3.0e-18 95.9 91 51.6
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 3.0e-18 95.9 84 56.0
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 5.1e-18 95.1 100 52.0
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 6.7e-18 94.7 87 54.0
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 8.7e-18 94.4 115 47.8
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 8.7e-18 94.4 111 47.7
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 1.1e-17 94.0 94 50.0
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.1e-17 94.0 84 54.8
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 1.9e-17 93.2 88 52.3
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.5e-17 92.8 62 66.1
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.5e-17 92.8 84 54.8
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 7.4e-17 91.3 83 55.4
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 9.6e-17 90.9 104 51.0
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.6e-16 90.1 84 53.6
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 1.6e-16 90.1 62 62.9
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.8e-16 89.4 72 56.9
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 3.7e-16 89.0 63 63.5
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.4e-15 87.0 61 60.7
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 4.5e-14 82.0 101 46.5
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 1.3e-13 80.5 63 57.1
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 8.4e-13 77.8 47 61.7
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 2.5e-12 76.3 84 42.9
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 5.1e-10 68.6 106 35.8
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 5.7e-09 65.1 92 37.0
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 5.7e-09 65.1 37 67.6
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 9.0e-07 57.8 42 76.2
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 2.6e-06 56.2 42 76.2


User provided reference genes

Program Settings