Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37169 Brassica carinata HOM05D006928 ORTHO05D008618 4.6e-43 177.6 93 100.0
C09p67690 Brassica napus HOM05D006928 ORTHO05D008618 4.6e-43 177.6 93 100.0
BolC9t59531H Brassica oleracea HOM05D006928 ORTHO05D008618 4.6e-43 177.6 93 100.0
BraA10t44815Z Brassica rapa HOM05D006928 ORTHO05D008618 1.3e-42 176.0 93 98.9
A10p27630 Brassica napus HOM05D006928 ORTHO05D008618 3.9e-42 174.5 93 97.8
Sp6g33580 Schrenkiella parvula HOM05D006928 ORTHO05D008618 1.6e-40 169.1 92 95.7
AT5G09830 Arabidopsis thaliana HOM05D006928 ORTHO05D008618 2.3e-39 165.2 94 95.7
Carub.0006s0825 Capsella rubella HOM05D006928 ORTHO05D008618 2.3e-39 165.2 93 91.4
AL6G20240 Arabidopsis lyrata HOM05D006928 ORTHO05D008618 6.8e-39 163.7 94 93.6
Thhalv10015138m.g Eutrema salsugineum HOM05D006928 ORTHO05D008618 8.9e-39 163.3 92 92.4
THA.LOC104818466 Tarenaya hassleriana HOM05D006928 ORTHO05D008618 1.4e-36 156.0 86 91.9
THA.LOC104799431 Tarenaya hassleriana HOM05D006928 ORTHO05D008618 9.2e-36 153.3 86 89.5
AL8G42110 Arabidopsis lyrata HOM05D006928 ORTHO05D008618 3.0e-34 148.3 87 88.5
Thhalv10005190m.g Eutrema salsugineum HOM05D006928 ORTHO05D008618 3.9e-34 147.9 87 88.5
Aa31LG1G17250 Aethionema arabicum HOM05D006928 ORTHO05D008618 5.0e-34 147.5 93 83.9
BcaB04g19985 Brassica carinata HOM05D006928 ORTHO05D008618 4.3e-33 144.4 87 86.2
BolC9t53907H Brassica oleracea HOM05D006928 ORTHO05D008618 5.6e-33 144.1 89 84.3
Sp2g27750 Schrenkiella parvula HOM05D006928 ORTHO05D008618 7.3e-33 143.7 87 85.1
BraA09t36529Z Brassica rapa HOM05D006928 ORTHO05D008618 1.6e-32 142.5 87 85.1
BcaB08g37178 Brassica carinata HOM05D006928 ORTHO05D008618 3.6e-32 141.4 93 83.9
CARHR278670 Cardamine hirsuta HOM05D006928 ORTHO05D008618 4.7e-32 141.0 87 85.1
Eucgr.I00245 Eucalyptus grandis HOM05D006928 ORTHO05D008618 6.2e-32 140.6 92 79.3
TPR.G2179 Trifolium pratense HOM05D006928 ORTHO05D008618 6.2e-32 140.6 84 84.5
Gohir.A02G138100 Gossypium hirsutum HOM05D006928 ORTHO05D008618 4.0e-31 137.9 92 77.2
Gohir.D03G048800 Gossypium hirsutum HOM05D006928 ORTHO05D008618 4.0e-31 137.9 92 77.2
Gorai.003G050100 Gossypium raimondii HOM05D006928 ORTHO05D008618 4.0e-31 137.9 92 77.2
COL.COLO4_22417 Corchorus olitorius HOM05D006928 ORTHO05D008618 5.2e-31 137.5 92 77.2
Psat7g048720 Pisum sativum HOM05D006928 ORTHO05D008618 6.8e-31 137.1 84 82.1
Aqoxy3G02632 Aquilegia oxysepala HOM05D006928 ORTHO05D008618 1.2e-30 136.3 86 80.2
ClCG02G000690 Citrullus lanatus HOM05D006928 ORTHO05D008618 1.2e-30 136.3 91 74.7
Duzib264G0933 Durio zibethinus HOM05D006928 ORTHO05D008618 1.5e-30 136.0 92 75.0
Sed0020530 Sechium edule HOM05D006928 ORTHO05D008618 1.5e-30 136.0 91 73.6
Thecc.01G120800 Theobroma cacao HOM05D006928 ORTHO05D008618 1.5e-30 136.0 84 81.0
BcaC04g23298 Brassica carinata HOM05D006928 ORTHO05D008618 2.6e-30 135.2 98 75.5
RcHm_v2.0_Chr2g0119151 Rosa chinensis HOM05D006928 ORTHO05D008618 2.6e-30 135.2 84 81.0
Glyma.05G188300 Glycine max HOM05D006928 ORTHO05D008618 3.4e-30 134.8 84 82.1
Prupe.6G162900 Prunus persica HOM05D006928 ORTHO05D008618 3.4e-30 134.8 84 81.0
TWI75G0630 Tripterygium wilfordii HOM05D006928 ORTHO05D008618 3.4e-30 134.8 84 79.8
EL10Ac6g15253 Beta vulgaris HOM05D006928 ORTHO05D008618 4.4e-30 134.4 84 79.8
Carub.0008s2549 Capsella rubella HOM05D006928 ORTHO05D008618 4.4e-30 134.4 87 81.6
Hund03424 Selenicereus undatus HOM05D006928 ORTHO05D008618 4.4e-30 134.4 84 79.8
AUR62003624 Chenopodium quinoa HOM05D006928 ORTHO05D008618 5.8e-30 134.0 84 79.8
MD15G1343100 Malus domestica HOM05D006928 ORTHO05D008618 7.5e-30 133.7 84 78.6
CsaV3_2G018080 Cucumis sativus L. HOM05D006928 ORTHO05D008618 9.8e-30 133.3 91 72.5
FAN23G1796 Fragaria x ananassa HOM05D006928 ORTHO05D008618 9.8e-30 133.3 91 78.0
FAN28G2803 Fragaria x ananassa HOM05D006928 ORTHO05D008618 9.8e-30 133.3 91 78.0
Atru.chr4.541 Acer truncatum HOM05D006928 ORTHO05D008618 1.3e-29 132.9 84 79.8
Ciclev10026852m.g Citrus clementina HOM05D006928 ORTHO05D008618 1.7e-29 132.5 88 75.0
Lj4g0006915 Lotus japonicus HOM05D006928 ORTHO05D008618 1.7e-29 132.5 84 78.6
FvH4_1g23590 Fragaria vesca HOM05D006928 ORTHO05D008618 2.2e-29 132.1 91 76.9
FAN19G2906 Fragaria x ananassa HOM05D006928 ORTHO05D008618 2.2e-29 132.1 91 76.9
CANSAT01G1375 Cannabis sativa HOM05D006928 ORTHO05D008618 2.9e-29 131.7 84 78.6
Glyma.08G146400 Glycine max HOM05D006928 ORTHO05D008618 2.9e-29 131.7 84 79.8
Cfa002868 Carpinus fangiana HOM05D006928 ORTHO05D008618 3.7e-29 131.3 83 78.3
Sabra16G0195000 Salix brachista HOM05D006928 ORTHO05D008618 4.9e-29 131.0 92 73.9
CSS0007569 Camellia sinensis var. sinensis HOM05D006928 ORTHO05D008618 8.3e-29 130.2 89 74.2
CSS0018620 Camellia sinensis var. sinensis HOM05D006928 ORTHO05D008618 8.3e-29 130.2 89 74.2
Phvul.002G269100 Phaseolus vulgaris HOM05D006928 ORTHO05D008618 8.3e-29 130.2 84 78.6
ECA238G4197 Erigeron canadensis HOM05D006928 ORTHO05D008618 1.1e-28 129.8 86 76.7
Lalb_Chr12g0203321 Lupinus albus HOM05D006928 ORTHO05D008618 1.4e-28 129.4 85 77.6
Sc16g0003960 Simmondsia chinensis HOM05D006928 ORTHO05D008618 1.4e-28 129.4 91 72.5
Cc00_g00790 Coffea canephora HOM05D006928 ORTHO05D008618 1.9e-28 129.0 84 77.4
Cc07_g17360 Coffea canephora HOM05D006928 ORTHO05D008618 1.9e-28 129.0 84 77.4
Duzib187G1761 Durio zibethinus HOM05D006928 ORTHO05D008618 2.4e-28 128.6 92 71.7
Manes.12G150300 Manihot esculenta HOM05D006928 ORTHO05D008618 2.4e-28 128.6 92 72.8
Nn1g06098 Nelumbo nucifera HOM05D006928 ORTHO05D008618 2.4e-28 128.6 84 75.0
MSTRG.2691 Avicennia marina HOM05D006928 ORTHO05D008618 3.2e-28 128.3 88 72.7
Dinv09934 Davidia involucrata HOM05D006928 ORTHO05D008618 3.2e-28 128.3 84 75.0
GSVIVG01026587001 Vitis vinifera HOM05D006928 ORTHO05D008618 3.2e-28 128.3 84 75.0
C09p09990 Brassica napus HOM05D006928 ORTHO05D008618 4.1e-28 127.9 92 76.1
PGR119G2472 Punica granatum HOM05D006928 ORTHO05D008618 4.1e-28 127.9 84 75.0
TAR381G0700 Trochodendron aralioides HOM05D006928 ORTHO05D008618 7.1e-28 127.1 84 75.0
CARHR203570 Cardamine hirsuta HOM05D006928 ORTHO05D008618 1.2e-27 126.3 75 92.0
MBI09_g18622_MAGBIO Magnolia biondii HOM05D006928 ORTHO05D008618 1.2e-27 126.3 84 73.8
MBI09_g20115_MAGBIO Magnolia biondii HOM05D006928 ORTHO05D008618 1.2e-27 126.3 84 73.8
Actinidia17615 Actinidia chinensis HOM05D006928 ORTHO05D008618 2.1e-27 125.6 83 77.1
Potri.001G309200 Populus trichocarpa HOM05D006928 ORTHO05D008618 2.1e-27 125.6 92 71.7
Nitab4.5_0010284g0020 Nicotiana tabacum HOM05D006928 ORTHO05D008618 2.7e-27 125.2 84 73.8
CiPaw.04G083900 Carya illinoinensis HOM05D006928 ORTHO05D008618 6.0e-27 124.0 82 75.6
HanXRQChr15g0471661 Helianthus annuus HOM05D006928 ORTHO05D008618 1.0e-26 123.2 86 72.1
CDE12G0365 Ceratophyllum demersum HOM05D006928 ORTHO05D008618 1.7e-26 122.5 79 75.9
Migut.H01113 Erythranthe guttata HOM05D006928 ORTHO05D008618 1.7e-26 122.5 78 78.2
PSO541G1601 Papaver somniferum HOM05D006928 ORTHO05D008618 3.0e-26 121.7 84 75.0
Solyc11g005360.2 Solanum lycopersicum HOM05D006928 ORTHO05D008618 3.0e-26 121.7 85 71.8
Sopen11g001370 Solanum pennellii HOM05D006928 ORTHO05D008618 3.0e-26 121.7 85 71.8
AagrBONN_evm.TU.Sc2ySwM_344.3776 Anthoceros agrestis HOM05D006928 ORTHO05D008618 3.9e-26 121.3 88 67.0
Lsat_1_v5_gn_2_66720 Lactuca sativa HOM05D006928 ORTHO05D008618 3.9e-26 121.3 87 72.4
Peaxi162Scf00025g02217 Petunia axillaris HOM05D006928 ORTHO05D008618 5.1e-26 120.9 84 71.4
DCAR_027258 Daucus carota HOM05D006928 ORTHO05D008618 1.5e-25 119.4 85 76.5
Nitab4.5_0002064g0030 Nicotiana tabacum HOM05D006928 ORTHO05D008618 1.5e-25 119.4 84 70.2
PSO675G6866 Papaver somniferum HOM05D006928 ORTHO05D008618 1.5e-25 119.4 84 73.8
HPP92_027450 Vanilla planifolia HOM05D006928 ORTHO05D008618 1.2e-24 116.3 80 72.5
Pp3c4_15580 Physcomitrium patens HOM05D006928 ORTHO05D008618 8.1e-24 113.6 91 65.9
Medtr8g092690 Medicago truncatula HOM05D006928 ORTHO05D008618 1.1e-23 113.2 65 86.2
CDE04G1901 Ceratophyllum demersum HOM05D006928 ORTHO05D008618 1.4e-23 112.8 84 70.2
SMO351G0462 Selaginella moellendorffii HOM05D006928 ORTHO05D008618 4.0e-23 111.3 79 68.4
Mapoly0023s0156 Marchantia polymorpha HOM05D006928 ORTHO05D008618 1.5e-22 109.4 88 61.4
Zm00001eb146740 Zea mays HOM05D006928 ORTHO05D008618 2.0e-22 109.0 80 70.0
Haze_25192 Corylus avellana HOM05D006928 ORTHO05D008618 3.4e-22 108.2 65 83.1
Haze_25197 Corylus avellana HOM05D006928 ORTHO05D008618 5.8e-22 107.5 65 81.5
Cpa.g.sc1003.1 Carica papaya HOM05D006928 ORTHO05D008618 9.9e-22 106.7 67 77.6
Haze_25196 Corylus avellana HOM05D006928 ORTHO05D008618 9.9e-22 106.7 64 82.8
QL06p051863 Quercus lobata HOM05D006928 ORTHO05D008618 2.9e-21 105.1 65 78.5
Actinidia26282 Actinidia chinensis HOM05D006928 ORTHO05D008618 6.4e-21 104.0 75 70.7
AUR62017933 Chenopodium quinoa HOM05D006928 ORTHO05D008618 6.4e-21 104.0 65 80.0
Ah.03g146570 Amaranthus hybridus HOM05D006928 ORTHO05D008618 1.9e-20 102.4 73 72.6
Rhsim08G0003500 Rhododendron simsii HOM05D002612 ORTHO05D008618 5.4e-20 100.9 65 78.5
TAR376G0498 Trochodendron aralioides HOM05D006928 ORTHO05D008618 5.4e-20 100.9 71 71.8
SGA_v2.0_scaffold137G35109 Striga asiatica HOM05D006928 ORTHO05D008618 3.5e-19 98.2 74 67.6
CBR_g19927 Chara braunii HOM05D006928 ORTHO05D008618 7.8e-19 97.1 78 62.8
SalBow1G8150 Salvia bowleyana HOM05D006928 ORTHO05D008618 1.3e-18 96.3 76 65.8
CAN.G249.11 Capsicum annuum HOM05D006928 ORTHO05D008618 2.3e-18 95.5 65 73.8
Cre03.g164550 Chlamydomonas reinhardtii HOM05D006928 ORTHO05D008618 3.0e-18 95.1 77 66.2
unitig_0.g37 Utricularia gibba HOM05D006928 ORTHO05D008618 1.1e-17 93.2 62 74.2
Os01g0866600 Oryza sativa ssp. japonica HOM05D006928 ORTHO05D008618 2.1e-16 89.0 65 69.2
SEGI_33222 Sequoiadendron giganteum HOM05D006928 ORTHO05D008618 4.0e-15 84.7 105 50.5
Cc05_g15440 Coffea canephora HOM05D002854 ORTHO05D003051 6.2e-08 60.8 85 44.7
Zm00001eb333130 Zea mays HOM05D002854 ORTHO05D003051 2.4e-07 58.9 87 46.0
unitig_21.g20271 Utricularia gibba HOM05D002854 ORTHO05D003051 9.0e-07 57.0 85 42.4
Lsat_1_v5_gn_7_116481 Lactuca sativa HOM05D002854 ORTHO05D003051 1.2e-06 56.6 84 42.9
Oeu049427.2 Olea europaea HOM05D002854 ORTHO05D003051 1.2e-06 56.6 88 43.2
SalBow3G3879 Salvia bowleyana HOM05D002854 ORTHO05D003051 1.2e-06 56.6 85 44.7
Atru.chr2.3884 Acer truncatum HOM05D002854 ORTHO05D003051 1.5e-06 56.2 85 41.2
MBI15_g19867_MAGBIO Magnolia biondii HOM05D002854 ORTHO05D003051 1.5e-06 56.2 86 44.2
Solyc12g015830.1 Solanum lycopersicum HOM05D002854 ORTHO05D003051 1.5e-06 56.2 84 39.3
Cfa021906 Carpinus fangiana HOM05D002854 ORTHO05D003051 2.0e-06 55.8 85 43.5
CiPaw.10G167200 Carya illinoinensis HOM05D002854 ORTHO05D003051 2.0e-06 55.8 78 43.6
Haze_09882 Corylus avellana HOM05D002854 ORTHO05D003051 2.0e-06 55.8 85 43.5
MD11G1039000 Malus domestica HOM05D002854 ORTHO05D003051 2.0e-06 55.8 87 41.4
Pp3c19_13280 Physcomitrium patens HOM05D002854 ORTHO05D003051 2.0e-06 55.8 95 41.1
Solyc12g015910.1 Solanum lycopersicum HOM05D002854 ORTHO05D003051 2.0e-06 55.8 85 41.2
Sopen12g007810 Solanum pennellii HOM05D002854 ORTHO05D003051 2.0e-06 55.8 85 41.2
PGSC0003DMG402029805 Solanum tuberosum HOM05D002854 ORTHO05D003051 2.0e-06 55.8 85 41.2
VMungo0331G0648 Vigna mungo HOM05D002854 ORTHO05D003051 2.0e-06 55.8 86 40.7
Atru.chr5.1372 Acer truncatum HOM05D002854 ORTHO05D003051 2.6e-06 55.5 85 41.2
Os09g0270900 Oryza sativa ssp. japonica HOM05D002854 ORTHO05D003051 2.6e-06 55.5 87 43.7
Pp3c5_25080 Physcomitrium patens HOM05D002854 ORTHO05D003051 2.6e-06 55.5 82 37.8
Sopen02g026450 Solanum pennellii HOM05D002854 ORTHO05D003051 2.6e-06 55.5 85 41.2
EL10Ac4g09787 Beta vulgaris HOM05D002854 ORTHO05D003051 4.4e-06 54.7 78 41.0
CAN.G222.157 Capsicum annuum HOM05D002854 ORTHO05D003051 4.4e-06 54.7 87 37.9
FvH4_3g42140 Fragaria vesca HOM05D002854 ORTHO05D003051 4.4e-06 54.7 87 40.2
FAN25G3339 Fragaria x ananassa HOM05D002854 ORTHO05D003051 4.4e-06 54.7 87 40.2
Hma1.2p1_2203F.1_g317080 Hydrangea macrophylla HOM05D002854 ORTHO05D003051 4.4e-06 54.7 84 40.5
VMungo0331G1734 Vigna mungo HOM05D002854 ORTHO05D003051 4.4e-06 54.7 86 39.5
Migut.M01616 Erythranthe guttata HOM05D002854 ORTHO05D003051 5.8e-06 54.3 85 41.2
Ah.03g134530 Amaranthus hybridus HOM05D002854 ORTHO05D003051 9.9e-06 53.5 86 40.7
DCAR_013778 Daucus carota HOM05D002854 ORTHO05D003051 9.9e-06 53.5 86 39.5
ECA240G1791 Erigeron canadensis HOM05D000004 ORTHO05D000002 9.9e-06 53.5 80 41.2
PRCOL_00000501 Prasinoderma coloniale HOM05D002854 ORTHO05D003051 9.9e-06 53.5 77 44.2
Rhsim06G0232900 Rhododendron simsii HOM05D002854 ORTHO05D003051 9.9e-06 53.5 86 40.7
SGA_v2.0_scaffold7G03530 Striga asiatica HOM05D002854 ORTHO05D003051 9.9e-06 53.5 85 37.6


User provided reference genes

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