Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 4.7e-61 237.7 119 100.0
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 2.5e-17 92.4 64 81.2
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 5.7e-14 81.3 81 56.8
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 8.2e-13 77.4 103 46.6
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 8.2e-13 77.4 103 46.6
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 8.2e-13 77.4 103 46.6
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 8.2e-13 77.4 103 46.6
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 8.2e-13 77.4 103 46.6
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 8.2e-13 77.4 103 46.6
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 8.2e-13 77.4 103 46.6
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 8.2e-13 77.4 103 46.6
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 8.2e-13 77.4 103 46.6
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 8.2e-13 77.4 103 46.6
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.4e-12 76.6 95 47.4
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.8e-12 76.3 103 45.6
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.8e-12 76.3 103 45.6
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.8e-12 76.3 103 45.6
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 2.4e-12 75.9 88 48.9
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 2.4e-12 75.9 103 46.6
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 2.4e-12 75.9 103 43.7
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 5.3e-12 74.7 103 44.7
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 5.3e-12 74.7 103 44.7
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 5.3e-12 74.7 103 45.6
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 6.9e-12 74.3 103 45.6
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 6.9e-12 74.3 103 45.6
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 9.1e-12 73.9 103 44.7
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 9.1e-12 73.9 103 44.7
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 9.1e-12 73.9 103 43.7
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 9.1e-12 73.9 107 45.8
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 9.1e-12 73.9 103 45.6
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 9.1e-12 73.9 103 45.6
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 9.1e-12 73.9 107 43.9
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.2e-11 73.6 103 41.7
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.2e-11 73.6 108 45.4
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.5e-11 73.2 103 44.7
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 1.5e-11 73.2 103 42.7
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.5e-11 73.2 82 52.4
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.5e-11 73.2 103 43.7
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.5e-11 73.2 103 43.7
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.5e-11 73.2 103 43.7
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 1.5e-11 73.2 103 43.7
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.5e-11 73.2 103 43.7
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.5e-11 73.2 103 43.7
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.5e-11 73.2 103 42.7
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 2.0e-11 72.8 103 44.7
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 2.0e-11 72.8 103 43.7
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 2.0e-11 72.8 103 44.7
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 2.0e-11 72.8 103 43.7
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 2.0e-11 72.8 103 42.7
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 2.0e-11 72.8 103 43.7
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.0e-11 72.8 103 42.7
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 2.6e-11 72.4 103 42.7
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 2.6e-11 72.4 103 42.7
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.6e-11 72.4 103 43.7
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.6e-11 72.4 103 42.7
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 2.6e-11 72.4 103 41.7
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.6e-11 72.4 103 41.7
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 2.6e-11 72.4 103 41.7
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 3.4e-11 72.0 103 43.7
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 3.4e-11 72.0 103 41.7
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 3.4e-11 72.0 95 46.3
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 3.4e-11 72.0 103 41.7
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 3.4e-11 72.0 103 41.7
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 3.4e-11 72.0 103 42.7
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.4e-11 72.0 103 42.7
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 3.4e-11 72.0 103 41.7
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 3.4e-11 72.0 95 45.3
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 4.5e-11 71.6 103 43.7
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 4.5e-11 71.6 104 43.3
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 4.5e-11 71.6 103 42.7
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 4.5e-11 71.6 103 41.7
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 4.5e-11 71.6 103 41.7
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 4.5e-11 71.6 103 43.7
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 4.5e-11 71.6 97 44.3
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 4.5e-11 71.6 107 44.9
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 4.5e-11 71.6 103 41.7
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 4.5e-11 71.6 103 42.7
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 4.5e-11 71.6 103 40.8
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 5.9e-11 71.2 103 42.7
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 5.9e-11 71.2 107 43.9
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.9e-11 71.2 103 41.7
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.9e-11 71.2 103 41.7
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.9e-11 71.2 103 41.7
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.9e-11 71.2 103 41.7
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 5.9e-11 71.2 103 41.7
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 5.9e-11 71.2 103 44.7
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 5.9e-11 71.2 95 45.3
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 5.9e-11 71.2 103 41.7
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 5.9e-11 71.2 103 40.8
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 5.9e-11 71.2 103 42.7
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 7.7e-11 70.9 103 41.7
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 7.7e-11 70.9 103 41.7
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 7.7e-11 70.9 103 42.7
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 7.7e-11 70.9 103 40.8
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 7.7e-11 70.9 103 42.7
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.0e-10 70.5 103 40.8
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 1.0e-10 70.5 103 41.7
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.0e-10 70.5 103 40.8
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.0e-10 70.5 103 41.7
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.0e-10 70.5 103 42.7
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.3e-10 70.1 103 41.7
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.3e-10 70.1 103 41.7
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.3e-10 70.1 103 41.7
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.3e-10 70.1 103 42.7
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 1.3e-10 70.1 103 41.7
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.3e-10 70.1 103 40.8
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.7e-10 69.7 103 43.7
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.7e-10 69.7 103 41.7
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.7e-10 69.7 103 41.7
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.2e-10 69.3 103 39.8
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.2e-10 69.3 103 39.8
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.2e-10 69.3 103 40.8
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.2e-10 69.3 103 40.8
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 2.2e-10 69.3 103 40.8
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.2e-10 69.3 103 40.8
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.2e-10 69.3 103 40.8
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 2.9e-10 68.9 103 41.7
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 2.9e-10 68.9 103 40.8
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 2.9e-10 68.9 103 40.8
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.9e-10 68.9 103 41.7
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 2.9e-10 68.9 103 42.7
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.9e-10 68.9 103 41.7
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 3.8e-10 68.6 103 44.7
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 3.8e-10 68.6 103 40.8
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 6.5e-10 67.8 103 41.7
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 8.5e-10 67.4 103 39.8
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 8.5e-10 67.4 103 40.8
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 8.5e-10 67.4 103 43.7
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 8.5e-10 67.4 103 40.8
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 8.5e-10 67.4 103 41.7
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.1e-09 67.0 102 41.2
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.4e-09 66.6 95 43.2
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 1.9e-09 66.2 32 100.0
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.9e-09 66.2 32 100.0
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.9e-09 66.2 103 39.8
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 1.9e-09 66.2 102 39.2
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.5e-09 65.9 102 39.2
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 2.5e-09 65.9 103 38.8
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 5.5e-09 64.7 32 90.6
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.4e-09 63.9 62 54.8
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 1.2e-08 63.5 33 87.9
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.7e-08 62.4 32 90.6
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 2.7e-08 62.4 32 90.6
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 3.6e-08 62.0 103 37.9
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 4.7e-08 61.6 123 34.1
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.0e-07 60.5 103 37.9
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 2.3e-07 59.3 70 54.3
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.9e-07 58.5 32 84.4
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 8.8e-07 57.4 34 70.6
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.1e-06 57.0 104 33.7
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.5e-06 56.6 104 35.6
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.0e-06 56.2 103 35.9
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 4.4e-06 55.1 32 81.2
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 9.7e-06 53.9 32 78.1
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 9.7e-06 53.9 32 78.1


User provided reference genes

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