Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p26920 Brassica napus HOM05D002778 ORTHO05D003112 4.8e-19 96.7 44 100.0
C09p66110 Brassica napus HOM05D002778 ORTHO05D003112 4.8e-19 96.7 44 100.0
BolC9t59431H Brassica oleracea HOM05D002778 ORTHO05D003112 4.8e-19 96.7 44 100.0
BraA10t44743Z Brassica rapa HOM05D002778 ORTHO05D003112 4.8e-19 96.7 44 100.0
CARHR202640 Cardamine hirsuta HOM05D002778 ORTHO05D003112 1.2e-12 75.5 68 57.4
AT5G10695 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 5.7e-12 73.2 68 57.4
Aa31LG3G16440 Aethionema arabicum HOM05D002778 ORTHO05D003112 1.7e-11 71.6 66 56.1
Thhalv10016058m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 1.7e-11 71.6 66 56.1
Carub.0006s0916 Capsella rubella HOM05D002778 ORTHO05D003112 5.4e-10 66.6 68 51.5
THA.LOC109116734 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 1.2e-09 65.5 57 57.9
SalBow4G0971 Salvia bowleyana HOM05D002778 ORTHO05D003112 2.2e-08 61.2 64 48.4
Manes.15G098500 Manihot esculenta HOM05D002778 ORTHO05D003112 2.9e-08 60.8 68 45.6
Gohir.D05G066400 Gossypium hirsutum HOM05D002778 ORTHO05D003112 5.0e-08 60.1 66 45.5
Gorai.009G067200 Gossypium raimondii HOM05D002778 ORTHO05D003112 5.0e-08 60.1 66 45.5
Gohir.A05G063800 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.1e-07 58.9 66 43.9
Manes.03G079400 Manihot esculenta HOM05D002778 ORTHO05D003112 1.5e-07 58.5 64 45.3
PGR102G1539 Punica granatum HOM05D002778 ORTHO05D003112 1.5e-07 58.5 68 42.6
COL.COLO4_19026 Corchorus olitorius HOM05D002778 ORTHO05D003112 1.9e-07 58.2 64 45.3
TWI36G0848 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 5.5e-07 56.6 64 42.2
Thecc.09G007900 Theobroma cacao HOM05D002778 ORTHO05D003112 9.4e-07 55.8 64 43.8
Eucgr.C02015 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.2e-06 55.5 68 39.7
Hma1.2p1_1961F.1_g309120 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 1.2e-06 55.5 64 40.6
Hma1.2p1_2332F.1_g320100 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 1.2e-06 55.5 64 40.6
Duzib187G1568 Durio zibethinus HOM05D002778 ORTHO05D003112 1.6e-06 55.1 64 43.8
CiPaw.08G020200 Carya illinoinensis HOM05D002778 ORTHO05D003112 2.1e-06 54.7 64 39.1
Haze_21753 Corylus avellana HOM05D002778 ORTHO05D003112 2.1e-06 54.7 64 42.2
HanXRQChr17g0538041 Helianthus annuus HOM05D002778 ORTHO05D003112 2.1e-06 54.7 64 42.2
TPR.G12466 Trifolium pratense HOM05D002778 ORTHO05D003112 2.1e-06 54.7 64 42.2
CiPaw.07G212100 Carya illinoinensis HOM05D002778 ORTHO05D003112 2.7e-06 54.3 64 42.2
Cc01_g10000 Coffea canephora HOM05D002778 ORTHO05D003112 2.7e-06 54.3 63 42.9
ATR0580G016 Amborella trichopoda HOM05D002778 ORTHO05D003112 3.6e-06 53.9 66 37.9
CAN.G809.78 Capsicum annuum HOM05D002778 ORTHO05D003112 3.6e-06 53.9 64 43.8
Ciclev10010727m.g Citrus clementina HOM05D002778 ORTHO05D003112 3.6e-06 53.9 64 40.6
CSS0015542 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 4.7e-06 53.5 68 39.7
Medtr3g108890 Medicago truncatula HOM05D002778 ORTHO05D003112 4.7e-06 53.5 64 40.6
Lsat_1_v5_gn_3_19520 Lactuca sativa HOM05D002778 ORTHO05D003112 6.1e-06 53.1 64 39.1
Solyc02g081560.1 Solanum lycopersicum HOM05D002778 ORTHO05D003112 6.1e-06 53.1 64 43.8
Cpa.g.sc23.21 Carica papaya HOM05D002778 ORTHO05D003112 8.0e-06 52.8 64 42.2
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 8.0e-06 52.8 64 39.1
Potri.018G007300 Populus trichocarpa HOM05D002778 ORTHO05D003112 8.0e-06 52.8 68 38.2


User provided reference genes

Program Settings