Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p66060 Brassica napus HOM05D002187 ORTHO05D002243 1.6e-55 219.2 107 100.0
BcaB08g37313 Brassica carinata HOM05D002187 ORTHO05D002243 2.2e-17 92.4 46 97.8
BcaC04g19289 Brassica carinata HOM05D002187 ORTHO05D002243 2.2e-17 92.4 46 97.8
BraA10t44740Z Brassica rapa HOM05D002187 ORTHO05D002243 2.2e-17 92.4 46 97.8
BcaB05g21501 Brassica carinata HOM05D002187 ORTHO05D002243 8.4e-17 90.5 46 95.7
BcaC03g13327 Brassica carinata HOM05D002187 ORTHO05D002243 8.4e-17 90.5 46 95.7
BraA02t05045Z Brassica rapa HOM05D002187 ORTHO05D002243 8.4e-17 90.5 46 95.7
Carub.0006s0920 Capsella rubella HOM05D002187 ORTHO05D002243 8.4e-17 90.5 46 95.7
Sp6g32730 Schrenkiella parvula HOM05D002187 ORTHO05D002243 8.4e-17 90.5 46 95.7
Duzib187G1650 Durio zibethinus HOM05D002187 ORTHO05D002243 2.4e-16 89.0 46 93.5
AL6G21270 Arabidopsis lyrata HOM05D002187 ORTHO05D002243 3.2e-16 88.6 46 93.5
AT5G10730 Arabidopsis thaliana HOM05D002187 ORTHO05D002243 3.2e-16 88.6 46 93.5
Cpa.g.sc23.48 Carica papaya HOM05D002187 ORTHO05D002243 5.5e-16 87.8 46 91.3
Ciclev10009111m.g Citrus clementina HOM05D002187 ORTHO05D002243 5.5e-16 87.8 46 91.3
COL.COLO4_19002 Corchorus olitorius HOM05D002187 ORTHO05D002243 5.5e-16 87.8 46 91.3
Duzib150G1169 Durio zibethinus HOM05D002187 ORTHO05D002243 5.5e-16 87.8 46 91.3
Potri.018G013400 Populus trichocarpa HOM05D002187 ORTHO05D002243 5.5e-16 87.8 46 91.3
CARHR202590 Cardamine hirsuta HOM05D002187 ORTHO05D002243 7.1e-16 87.4 46 91.3
Thhalv10014285m.g Eutrema salsugineum HOM05D002187 ORTHO05D002243 7.1e-16 87.4 46 91.3
Manes.16G133500 Manihot esculenta HOM05D002187 ORTHO05D002243 7.1e-16 87.4 46 91.3
Potri.006G268000 Populus trichocarpa HOM05D002187 ORTHO05D002243 7.1e-16 87.4 46 91.3
Thecc.09G010800 Theobroma cacao HOM05D002187 ORTHO05D002243 7.1e-16 87.4 46 89.1
THA.LOC104814977 Tarenaya hassleriana HOM05D002187 ORTHO05D002243 9.3e-16 87.0 46 91.3
GSVIVG01036044001 Vitis vinifera HOM05D002187 ORTHO05D002243 1.2e-15 86.7 46 89.1
Actinidia06442 Actinidia chinensis HOM05D002187 ORTHO05D002243 1.6e-15 86.3 46 89.1
ClCG08G013880 Citrullus lanatus HOM05D002187 ORTHO05D002243 1.6e-15 86.3 46 89.1
Cc08_g06340 Coffea canephora HOM05D002187 ORTHO05D002243 1.6e-15 86.3 46 89.1
MELO3C011320.2 Cucumis melo HOM05D002187 ORTHO05D002243 1.6e-15 86.3 46 89.1
CsaV3_2G032660 Cucumis sativus L. HOM05D002187 ORTHO05D002243 1.6e-15 86.3 46 89.1
Gohir.D05G065300 Gossypium hirsutum HOM05D002187 ORTHO05D002243 1.6e-15 86.3 46 89.1
Gorai.009G066100 Gossypium raimondii HOM05D002187 ORTHO05D002243 1.6e-15 86.3 46 89.1
Aa31LG3G16380 Aethionema arabicum HOM05D002187 ORTHO05D002243 2.1e-15 85.9 46 89.1
A02p00620 Brassica napus HOM05D002187 ORTHO05D002243 2.1e-15 85.9 47 93.6
BolC2t06421H Brassica oleracea HOM05D002187 ORTHO05D002243 2.1e-15 85.9 47 93.6
MD08G1049300 Malus domestica HOM05D002187 ORTHO05D002243 2.1e-15 85.9 46 89.1
TWI63G1524 Tripterygium wilfordii HOM05D002187 ORTHO05D002243 2.1e-15 85.9 46 89.1
TAR622G0938 Trochodendron aralioides HOM05D002187 ORTHO05D002243 2.1e-15 85.9 46 87.0
Zm00001eb132380 Zea mays HOM05D002187 ORTHO05D002243 2.1e-15 85.9 46 87.0
C02p04610 Brassica napus HOM05D002187 ORTHO05D002243 2.7e-15 85.5 48 91.7
CANSAT25G0833 Cannabis sativa HOM05D002187 ORTHO05D002243 2.7e-15 85.5 46 89.1
Sopen08g002470 Solanum pennellii HOM05D002187 ORTHO05D002243 2.7e-15 85.5 46 87.0
TAR629G0047 Trochodendron aralioides HOM05D002187 ORTHO05D002243 2.7e-15 85.5 46 87.0
Actinidia36295 Actinidia chinensis HOM05D002187 ORTHO05D002243 3.5e-15 85.1 46 84.8
CSS0008141 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 3.5e-15 85.1 49 81.6
Gohir.A05G062800 Gossypium hirsutum HOM05D002187 ORTHO05D002243 3.5e-15 85.1 46 87.0
Gohir.A05G062866 Gossypium hirsutum HOM05D002187 ORTHO05D002243 3.5e-15 85.1 46 87.0
Lj7A742T21 Lonicera japonica HOM05D002187 ORTHO05D002243 3.5e-15 85.1 46 87.0
MBI15_g22710_MAGBIO Magnolia biondii HOM05D002187 ORTHO05D002243 3.5e-15 85.1 46 87.0
Nitab4.5_0000989g0040 Nicotiana tabacum HOM05D002187 ORTHO05D002243 3.5e-15 85.1 46 87.0
Peaxi162Scf00045g01833 Petunia axillaris HOM05D002187 ORTHO05D002243 3.5e-15 85.1 46 87.0
HPP92_027402 Vanilla planifolia HOM05D002187 ORTHO05D002243 3.5e-15 85.1 46 87.0
Cfa013000 Carpinus fangiana HOM05D002187 ORTHO05D002243 4.6e-15 84.7 46 87.0
Lalb_Chr11g0063441 Lupinus albus HOM05D002187 ORTHO05D002243 4.6e-15 84.7 46 87.0
PGR083G2273 Punica granatum HOM05D002187 ORTHO05D002243 4.6e-15 84.7 46 87.0
Sabra18G0017300 Salix brachista HOM05D002187 ORTHO05D002243 4.6e-15 84.7 46 89.1
Sed0019319 Sechium edule HOM05D002187 ORTHO05D002243 4.6e-15 84.7 46 84.8
Sc09g0010820 Simmondsia chinensis HOM05D002187 ORTHO05D002243 4.6e-15 84.7 46 87.0
FvH4_2g41440 Fragaria vesca HOM05D002187 ORTHO05D002243 6.0e-15 84.3 46 84.8
FAN15G1687 Fragaria x ananassa HOM05D002187 ORTHO05D002243 6.0e-15 84.3 46 84.8
FAN27G0807 Fragaria x ananassa HOM05D002187 ORTHO05D002243 6.0e-15 84.3 46 84.8
Hma1.2p1_0588F.1_g184435 Hydrangea macrophylla HOM05D002187 ORTHO05D002243 6.0e-15 84.3 46 87.0
Medtr3g105660 Medicago truncatula HOM05D002187 ORTHO05D002243 6.0e-15 84.3 46 84.8
RcHm_v2.0_Chr6g0299041 Rosa chinensis HOM05D002187 ORTHO05D002243 6.0e-15 84.3 46 87.0
Solyc08g006510.3 Solanum lycopersicum HOM05D002187 ORTHO05D002243 6.0e-15 84.3 46 84.8
vmacro05593 Vaccinium macrocarpon HOM05D002187 ORTHO05D002243 6.0e-15 84.3 46 84.8
Ah.10g025010 Amaranthus hybridus HOM05D002187 ORTHO05D002243 7.9e-15 84.0 46 84.8
EL10Ac2g02433 Beta vulgaris HOM05D002187 ORTHO05D002243 7.9e-15 84.0 46 84.8
CiPaw.07G234000 Carya illinoinensis HOM05D002187 ORTHO05D002243 7.9e-15 84.0 46 84.8
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 7.9e-15 84.0 46 87.0
CDE04G0777 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 7.9e-15 84.0 46 84.8
Dinv34872 Davidia involucrata HOM05D002187 ORTHO05D002243 7.9e-15 84.0 46 87.0
Eucgr.C01875 Eucalyptus grandis HOM05D002187 ORTHO05D002243 7.9e-15 84.0 46 84.8
Prupe.1G399300 Prunus persica HOM05D002187 ORTHO05D002243 7.9e-15 84.0 46 84.8
MSTRG.25813 Avicennia marina HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
CSS0031826 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
AUR62020302 Chenopodium quinoa HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 82.6
Ca_15795_v3 Cicer arietinum L. HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
Dinv06809 Davidia involucrata HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
Migut.A00404 Erythranthe guttata HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
Lj1g0003178 Lotus japonicus HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
MD15G1045600 Malus domestica HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
Nn4g23625 Nelumbo nucifera HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
Oeu014157.2 Olea europaea HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
Sed0019494 Sechium edule HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
SGA_v2.0_scaffold193G40698 Striga asiatica HOM05D002187 ORTHO05D002243 1.0e-14 83.6 46 84.8
Glyma.04G058600 Glycine max HOM05D002187 ORTHO05D002243 1.3e-14 83.2 46 84.8
HanXRQChr13g0412511 Helianthus annuus HOM05D002187 ORTHO05D002243 1.3e-14 83.2 46 80.4
Psat0s4637g0040 Pisum sativum HOM05D002187 ORTHO05D002243 1.3e-14 83.2 46 82.6
TPR.G6775 Trifolium pratense HOM05D002187 ORTHO05D002243 1.3e-14 83.2 46 82.6
Aqoxy3G03813 Aquilegia oxysepala HOM05D002187 ORTHO05D002243 1.8e-14 82.8 46 82.6
DCAR_032011 Daucus carota HOM05D002187 ORTHO05D002243 1.8e-14 82.8 46 82.6
Lsat_1_v5_gn_5_62121 Lactuca sativa HOM05D002187 ORTHO05D002243 1.8e-14 82.8 46 80.4
SalBow4G2070 Salvia bowleyana HOM05D002187 ORTHO05D002243 1.8e-14 82.8 46 87.0
Atru.chr7.2605 Acer truncatum HOM05D002187 ORTHO05D002243 2.3e-14 82.4 46 82.6
VMungo1309G0795 Vigna mungo HOM05D002187 ORTHO05D002243 2.3e-14 82.4 46 82.6
Manes.02G064300 Manihot esculenta HOM05D002187 ORTHO05D002243 3.0e-14 82.0 46 82.6
Rhsim10G0066000 Rhododendron simsii HOM05D002187 ORTHO05D002243 3.0e-14 82.0 46 82.6
CSS0022441 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 3.9e-14 81.6 46 80.4
unitig_747.g21899 Utricularia gibba HOM05D002187 ORTHO05D002243 3.9e-14 81.6 46 82.6
Oeu019794.2 Olea europaea HOM05D002187 ORTHO05D002243 5.1e-14 81.3 46 82.6
Peaxi162Scf00288g01015 Petunia axillaris HOM05D002187 ORTHO05D002243 5.1e-14 81.3 46 82.6
Sabra04G0075900 Salix brachista HOM05D002187 ORTHO05D002243 5.1e-14 81.3 46 84.8
ATR0691G165 Amborella trichopoda HOM05D002187 ORTHO05D002243 6.7e-14 80.9 46 80.4
Prupe.8G025300 Prunus persica HOM05D002187 ORTHO05D002243 6.7e-14 80.9 46 80.4
QL02p017682 Quercus lobata HOM05D002187 ORTHO05D002243 6.7e-14 80.9 46 80.4
arahy.Tifrunner.gnm1.ann1.MVX6LJ Arachis hypogaea HOM05D002187 ORTHO05D002243 8.7e-14 80.5 46 80.4
arahy.Tifrunner.gnm1.ann1.Z7V5PV Arachis hypogaea HOM05D002187 ORTHO05D002243 8.7e-14 80.5 46 80.4
Ciclev10012367m.g Citrus clementina HOM05D002187 ORTHO05D002243 8.7e-14 80.5 46 78.3
Os02g0556100 Oryza sativa ssp. japonica HOM05D002187 ORTHO05D002243 1.1e-13 80.1 46 78.3
PSO017G1282 Papaver somniferum HOM05D002187 ORTHO05D002243 1.1e-13 80.1 46 82.6
PSO478G3368 Papaver somniferum HOM05D002187 ORTHO05D002243 1.1e-13 80.1 46 82.6
THA.LOC104820963 Tarenaya hassleriana HOM05D002187 ORTHO05D002243 1.1e-13 80.1 46 78.3
ECA240G0785 Erigeron canadensis HOM05D002187 ORTHO05D002243 1.5e-13 79.7 46 76.1
Potri.004G106300 Populus trichocarpa HOM05D002187 ORTHO05D002243 1.5e-13 79.7 46 82.6
Phvul.009G085100 Phaseolus vulgaris HOM05D002187 ORTHO05D002243 2.5e-13 79.0 46 76.1
TWI60G0353 Tripterygium wilfordii HOM05D002187 ORTHO05D002243 2.5e-13 79.0 46 78.3
CAN.G396.12 Capsicum annuum HOM05D002187 ORTHO05D002243 3.3e-13 78.6 46 82.6
Atru.chr8.793 Acer truncatum HOM05D002187 ORTHO05D002243 4.3e-13 78.2 46 76.1
COL.COLO4_38266 Corchorus olitorius HOM05D002187 ORTHO05D002243 4.3e-13 78.2 46 76.1
Thecc.04G145200 Theobroma cacao HOM05D002187 ORTHO05D002243 9.6e-13 77.0 46 78.3
Lsat_1_v5_gn_6_15660 Lactuca sativa HOM05D002187 ORTHO05D002243 1.3e-12 76.6 46 78.3
HanXRQChr05g0135621 Helianthus annuus HOM05D002187 ORTHO05D002243 2.1e-12 75.9 46 73.9
Cfa007987 Carpinus fangiana HOM05D002187 ORTHO05D002243 2.8e-12 75.5 46 76.1
Aa31LG11G13690 Aethionema arabicum HOM05D002187 ORTHO05D002243 4.8e-12 74.7 46 71.7
ECA233G0933 Erigeron canadensis HOM05D002187 ORTHO05D002243 2.4e-11 72.4 46 71.7
Carub.0006s1410 Capsella rubella HOM05D002187 ORTHO05D002243 3.1e-11 72.0 46 71.7
AT5G15910 Arabidopsis thaliana HOM05D002187 ORTHO05D002243 5.3e-11 71.2 46 69.6
Thhalv10014393m.g Eutrema salsugineum HOM05D002187 ORTHO05D002243 5.3e-11 71.2 46 69.6
CARHR197400 Cardamine hirsuta HOM05D002187 ORTHO05D002243 9.0e-11 70.5 46 69.6
BcaNung02213 Brassica carinata HOM05D002187 ORTHO05D002243 1.2e-10 70.1 46 67.4
Sp6g28200 Schrenkiella parvula HOM05D002187 ORTHO05D002243 1.2e-10 70.1 46 69.6
AL6G26790 Arabidopsis lyrata HOM05D002187 ORTHO05D002243 2.0e-10 69.3 46 67.4
Mapoly0114s0058 Marchantia polymorpha HOM05D002187 ORTHO05D002243 2.0e-10 69.3 46 71.7
BcaC03g18459 Brassica carinata HOM05D002187 ORTHO05D002243 2.6e-10 68.9 46 67.4
C02p08060 Brassica napus HOM05D002187 ORTHO05D002243 2.6e-10 68.9 46 67.4
BolC2t06728H Brassica oleracea HOM05D002187 ORTHO05D002243 2.6e-10 68.9 46 67.4
BraA02t05300Z Brassica rapa HOM05D002187 ORTHO05D002243 2.6e-10 68.9 46 67.4
A02p03300 Brassica napus HOM05D002187 ORTHO05D002243 5.8e-10 67.8 46 65.2
SMO232G0026 Selaginella moellendorffii HOM05D002187 ORTHO05D002243 1.7e-09 66.2 46 63.0
CSS0021966 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 2.9e-09 65.5 43 74.4
Nitab4.5_0000502g0190 Nicotiana tabacum HOM05D002187 ORTHO05D002243 3.8e-09 65.1 34 91.2
Pp3c18_5720 Physcomitrium patens HOM05D002187 ORTHO05D002243 1.9e-08 62.8 46 58.7
Pp3c8_5120 Physcomitrium patens HOM05D002187 ORTHO05D002243 9.3e-08 60.5 48 56.2
Haze_14087 Corylus avellana HOM05D002187 ORTHO05D002243 3.9e-06 55.1 45 60.0


User provided reference genes

Program Settings