Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 2.6e-74 282.0 139 100.0
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 3.0e-59 231.9 121 94.2
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 2.8e-57 225.3 109 98.2
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 1.1e-56 223.4 109 97.2
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 3.0e-51 205.3 110 86.4
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 2.0e-50 202.6 110 84.5
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 2.0e-50 202.6 110 85.5
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 2.0e-50 202.6 129 77.5
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 2.6e-50 202.2 109 86.2
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 3.4e-50 201.8 109 85.3
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 4.4e-50 201.4 114 82.5
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 7.5e-50 200.7 107 86.9
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 1.3e-49 199.9 109 84.4
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 1.7e-49 199.5 110 84.5
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 1.4e-48 196.4 107 86.0
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.9e-45 186.0 114 74.6
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 2.1e-44 182.6 105 78.1
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.4e-43 179.9 107 76.6
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 8.9e-43 177.2 101 79.2
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 2.2e-41 172.6 98 77.6
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 2.2e-41 172.6 98 76.5
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 2.9e-41 172.2 110 73.6
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 8.3e-41 170.6 98 75.5
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 8.3e-41 170.6 101 76.2
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.1e-40 170.2 98 76.5
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 1.4e-40 169.9 98 75.5
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.4e-40 169.9 110 72.7
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 1.9e-40 169.5 103 72.8
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 3.2e-40 168.7 100 75.0
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 4.1e-40 168.3 98 73.5
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 5.4e-40 167.9 99 73.7
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 9.2e-40 167.2 102 72.5
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 9.2e-40 167.2 102 73.5
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 9.2e-40 167.2 98 74.5
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 9.2e-40 167.2 100 74.0
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 9.2e-40 167.2 98 73.5
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 1.2e-39 166.8 106 69.8
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 1.2e-39 166.8 118 66.1
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.6e-39 166.4 98 74.5
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 1.6e-39 166.4 101 73.3
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 2.0e-39 166.0 98 73.5
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 2.0e-39 166.0 98 75.5
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 2.0e-39 166.0 98 75.5
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 2.7e-39 165.6 105 71.4
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 3.5e-39 165.2 106 68.9
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 3.5e-39 165.2 98 74.5
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 3.5e-39 165.2 140 59.3
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 4.6e-39 164.9 98 72.4
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 4.6e-39 164.9 101 71.3
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 4.6e-39 164.9 99 71.7
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 6.0e-39 164.5 121 65.3
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 6.0e-39 164.5 98 72.4
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 6.0e-39 164.5 98 73.5
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 6.0e-39 164.5 99 70.7
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 1.0e-38 163.7 105 72.4
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 1.0e-38 163.7 99 71.7
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 1.0e-38 163.7 99 71.7
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 1.3e-38 163.3 100 74.0
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 1.3e-38 163.3 100 73.0
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.7e-38 162.9 98 71.4
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 2.3e-38 162.5 98 73.5
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 2.3e-38 162.5 98 71.4
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 2.3e-38 162.5 98 71.4
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 3.0e-38 162.2 98 73.5
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 3.9e-38 161.8 98 71.4
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 3.9e-38 161.8 98 73.5
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 5.0e-38 161.4 102 68.6
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 5.0e-38 161.4 135 60.0
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 5.0e-38 161.4 119 65.5
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 6.6e-38 161.0 126 61.1
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 6.6e-38 161.0 107 69.2
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 8.6e-38 160.6 98 73.5
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 8.6e-38 160.6 98 73.5
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 8.6e-38 160.6 98 73.5
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 8.6e-38 160.6 105 71.4
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.1e-37 160.2 98 70.4
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 1.5e-37 159.8 105 71.4
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.9e-37 159.5 99 66.7
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 1.9e-37 159.5 99 69.7
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 2.5e-37 159.1 98 69.4
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 2.5e-37 159.1 98 71.4
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 2.5e-37 159.1 117 64.1
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 3.3e-37 158.7 99 69.7
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 7.3e-37 157.5 98 68.4
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 9.5e-37 157.1 98 70.4
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 1.2e-36 156.8 98 68.4
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 1.2e-36 156.8 97 72.2
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 1.6e-36 156.4 99 67.7
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 2.8e-36 155.6 98 69.4
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 3.6e-36 155.2 105 67.6
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.8e-35 152.9 137 56.9
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 2.3e-35 152.5 93 71.0
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 5.2e-35 151.4 102 67.6
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 5.2e-35 151.4 100 63.0
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 8.9e-35 150.6 92 72.8
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 2.6e-34 149.1 92 68.5
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.7e-33 146.4 76 92.1
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 8.3e-33 144.1 91 67.0
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 1.1e-32 143.7 98 65.3
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 9.2e-32 140.6 92 65.2
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 4.6e-31 138.3 98 60.2
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 7.8e-31 137.5 98 61.2
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 5.1e-30 134.8 100 53.0
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 4.7e-28 128.3 71 80.3
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 4.7e-28 128.3 96 50.0
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 8.1e-28 127.5 69 76.8
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.1e-27 127.1 74 77.0
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 1.4e-27 126.7 81 69.1
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 2.0e-26 122.9 72 77.8
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.0e-26 122.9 73 76.7
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 2.6e-26 122.5 87 65.5
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 7.6e-26 120.9 71 73.2
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 9.9e-26 120.6 72 73.6
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.3e-25 120.2 98 49.0
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 2.9e-25 119.0 78 70.5
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 8.4e-25 117.5 80 62.5
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 2.1e-23 112.8 76 61.8
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 1.0e-22 110.5 96 52.1
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 2.2e-17 92.8 90 51.1
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 3.8e-17 92.0 102 46.1
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 3.2e-16 89.0 90 51.1
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 3.0e-14 82.4 43 90.7
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 2.4e-11 72.8 54 55.6
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 2.4e-08 62.8 66 47.0
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 4.6e-07 58.5 43 55.8
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 5.1e-06 55.1 51 54.9


User provided reference genes

Program Settings