Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 2344.7 1184 100.0
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 2340.5 1184 99.8
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 2327.7 1184 99.2
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 2324.3 1184 99.1
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 2278.4 1188 96.7
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 2263.4 1188 96.2
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 2239.2 1188 95.6
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 2238.4 1188 95.4
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 2231.1 1188 95.1
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 2189.1 1191 94.2
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 2175.6 1189 91.7
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 2051.9 1189 87.6
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1877.8 1203 79.0
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1876.3 1203 79.1
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1869.4 1200 79.3
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1865.5 1199 77.8
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1862.8 982 96.0
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1849.7 1202 78.3
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1849.3 1203 78.0
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1840.5 1203 77.8
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1838.2 1203 77.6
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1832.0 1202 77.1
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1825.4 1206 77.0
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1820.8 1202 77.4
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1813.9 1202 76.5
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1812.7 1294 72.3
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1812.0 1194 76.9
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1811.6 1202 76.1
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1807.3 1202 76.8
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1807.0 1202 76.9
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1802.7 1218 75.4
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1800.4 1197 75.7
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1798.9 1191 76.3
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1797.3 1218 75.0
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1795.4 1200 75.7
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1791.2 1197 75.0
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1787.3 1218 74.9
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1784.2 1202 74.5
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1782.7 1205 75.0
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1780.0 1203 75.1
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1776.9 1191 75.7
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1776.1 1203 75.1
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1765.7 1196 75.3
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1763.8 1205 73.9
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1763.8 1202 74.1
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1762.7 1197 74.4
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1760.7 1280 70.8
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1760.7 1198 74.5
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1758.4 1200 73.9
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1758.4 1199 74.1
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1752.3 1204 73.8
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1752.3 1288 70.8
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1752.3 1288 70.8
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1751.1 1202 73.8
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1749.6 1201 73.6
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1747.3 1203 73.6
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1744.6 1213 73.8
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1744.2 1130 78.9
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1743.0 1203 73.4
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1742.6 1195 74.2
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1741.1 1198 73.3
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1734.5 1195 73.6
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1731.8 1195 73.6
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1731.5 1198 73.0
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1729.5 1192 74.0
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1729.1 1198 72.8
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1729.1 1201 72.8
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1725.7 1195 74.1
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1721.8 1192 72.6
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1717.2 1202 72.7
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1716.8 1191 73.3
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1713.7 1184 73.1
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1713.7 1209 72.5
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1709.5 1204 73.2
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1708.3 1189 72.7
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1703.3 1345 67.6
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1701.8 1189 72.8
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1692.9 1203 71.8
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1690.6 1228 71.6
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1679.8 1097 77.9
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1677.5 1194 71.7
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1654.0 1180 71.1
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1642.9 1213 69.4
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1634.8 1181 71.6
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1611.7 1211 68.3
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1609.0 1205 69.7
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1544.6 1183 67.8
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1543.1 1184 65.7
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1535.8 1014 77.5
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1521.1 1192 65.3
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1520.0 1032 74.9
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1508.0 1045 73.4
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1505.0 1045 73.4
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1493.0 1206 63.5
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1469.1 1030 73.7
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1434.1 981 74.7
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1431.4 980 74.7
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1368.6 1051 66.2
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1331.2 899 75.8
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1317.4 829 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1299.6 1212 56.8
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1270.8 925 70.2
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1218.8 868 70.2
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1209.9 1228 53.7
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1115.9 905 64.6
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1084.3 1217 50.7
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 8.8e-309 1063.9 1216 49.8
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 6.2e-278 961.4 1182 45.1
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 4.2e-266 922.2 1317 42.1
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.0e-248 864.4 1223 42.7
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.3e-243 847.4 518 82.8
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.2e-226 789.6 1131 42.9
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 5.9e-188 662.5 424 78.3
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 3.8e-150 537.0 306 85.3
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.6e-148 531.6 484 60.7
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 5.3e-144 516.5 324 78.4
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 2.6e-143 514.2 431 61.7
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 7.6e-143 512.7 736 43.5
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.4e-127 460.7 323 70.0
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.8e-123 448.4 347 68.0
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 5.0e-118 430.3 292 76.0
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 1.0e-110 406.0 329 66.0
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 2.5e-101 374.8 307 62.2
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 5.0e-94 350.5 363 52.1
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 5.5e-85 320.5 291 54.6
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 8.0e-84 316.6 256 65.2
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 6.8e-83 313.5 391 46.5
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 4.3e-61 241.1 151 74.8
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 1.8e-59 235.7 260 50.4
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.5e-50 206.1 140 75.7
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 7.5e-50 203.8 116 81.0
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 6.0e-47 194.1 114 83.3
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.1e-43 183.3 138 63.0
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.8e-43 182.6 159 56.6
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 6.8e-43 180.6 208 51.9
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 2.0e-42 179.1 722 25.2
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.2e-40 171.8 268 39.9
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 4.3e-37 161.4 191 49.7
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 2.2e-33 149.1 159 53.5
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.0e-30 140.2 86 79.1
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.2e-26 126.7 159 43.4
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 7.1e-24 117.5 62 93.5
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.3e-17 96.7 71 64.8
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 2.9e-17 95.5 59 72.9
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.3e-14 85.9 224 29.5
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 5.7e-13 81.3 74 67.6
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 5.7e-13 81.3 74 67.6
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 2.1e-12 79.3 80 57.5
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 1.4e-11 76.6 45 75.6
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 3.1e-11 75.5 55 63.6
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 9.0e-11 73.9 70 55.7
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.5e-10 73.2 49 65.3
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 3.8e-09 68.6 38 78.9
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 6.5e-09 67.8 54 68.5
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 9.3e-08 63.9 142 33.8
BcaC03g13346 Brassica carinata HOM05D004589 ORTHO05D023960 3.0e-06 58.9 48 70.8


User provided reference genes

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