Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.3e-42 176.0 94 100.0
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 8.7e-42 173.3 94 97.9
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 1.1e-41 172.9 94 97.9
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.1e-41 172.9 94 98.9
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.1e-41 172.9 94 98.9
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 2.5e-41 171.8 94 96.8
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 2.4e-39 165.2 94 93.6
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 2.4e-39 165.2 94 94.7
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 4.0e-39 164.5 94 93.6
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 4.0e-39 164.5 94 93.6
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 4.0e-39 164.5 94 93.6
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 4.0e-39 164.5 94 93.6
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 4.0e-39 164.5 94 93.6
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 2.0e-38 162.2 94 91.5
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 5.8e-38 160.6 94 89.4
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 7.4e-33 143.7 83 92.8
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 3.7e-32 141.4 94 80.9
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.7e-32 141.4 83 90.4
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 2.2e-29 132.1 94 77.7
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.9e-26 121.3 94 71.3
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.5e-25 119.4 94 70.2
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 4.3e-25 117.9 94 76.6
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 9.6e-25 116.7 94 67.0
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.3e-24 116.3 94 68.1
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 3.7e-24 114.8 94 67.0
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 4.8e-24 114.4 94 67.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 4.8e-24 114.4 94 68.1
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 6.2e-24 114.0 94 67.0
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 8.2e-24 113.6 94 74.5
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.8e-23 112.5 94 67.0
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.0e-22 109.0 94 66.0
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 2.6e-22 108.6 94 66.0
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 4.5e-22 107.8 94 63.8
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 4.5e-22 107.8 94 63.8
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 5.8e-22 107.5 96 63.5
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.0e-21 106.7 96 64.6
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.0e-21 106.7 94 64.9
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.3e-21 106.3 94 67.0
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.2e-21 105.5 95 63.2
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 2.2e-21 105.5 94 67.0
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 2.9e-21 105.1 92 64.1
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.8e-21 104.8 96 62.5
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.4e-20 102.8 85 67.1
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.9e-20 102.4 96 63.5
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.9e-20 102.4 94 60.6
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 3.2e-20 101.7 94 61.7
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.2e-20 101.7 83 68.7
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 3.2e-20 101.7 94 62.8
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 4.2e-20 101.3 94 64.9
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 5.5e-20 100.9 101 61.4
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.2e-19 99.8 85 65.9
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 1.6e-19 99.4 95 65.3
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.6e-19 99.4 94 61.7
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 2.1e-19 99.0 83 67.5
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 2.7e-19 98.6 95 60.0
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 4.6e-19 97.8 95 63.2
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 1.0e-18 96.7 95 62.1
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 1.3e-18 96.3 94 57.4
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 2.3e-18 95.5 85 62.4
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 5.1e-18 94.4 94 59.6
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 6.7e-18 94.0 95 62.1
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 8.7e-18 93.6 94 58.5
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 1.1e-17 93.2 95 64.2
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 2.5e-17 92.0 101 54.5
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 3.3e-17 91.7 83 62.7
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.3e-17 91.7 84 64.3
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 4.3e-17 91.3 95 58.9
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 5.7e-17 90.9 99 56.6
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 9.7e-17 90.1 84 61.9
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.3e-16 89.7 95 56.8
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.3e-16 89.7 95 56.8
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 2.8e-16 88.6 90 57.8
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 2.8e-16 88.6 96 58.3
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 6.3e-16 87.4 102 55.9
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.1e-15 86.7 86 60.5
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 1.1e-15 86.7 83 59.0
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.4e-15 86.3 51 86.3
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.8e-15 85.9 94 56.4
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 2.4e-15 85.5 83 57.8
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 2.4e-15 85.5 131 43.5
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 3.1e-15 85.1 84 60.7
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.1e-15 85.1 83 59.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 6.9e-15 84.0 118 46.6
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 6.9e-15 84.0 83 59.0
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 1.2e-14 83.2 89 60.7
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.5e-14 82.8 118 47.5
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.5e-14 82.8 86 61.6
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 5.9e-14 80.9 84 60.7
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 1.3e-13 79.7 95 52.6
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.7e-13 79.3 51 80.4
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 2.2e-13 79.0 51 78.4
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.9e-13 78.6 78 57.7
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 6.5e-13 77.4 86 55.8
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.1e-12 76.6 71 60.6
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 1.4e-12 76.3 83 56.6
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.4e-12 76.3 77 63.6
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 2.5e-12 75.5 84 58.3
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 4.2e-12 74.7 94 48.9
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 7.2e-12 73.9 86 53.5
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 7.2e-12 73.9 105 45.7
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 9.4e-12 73.6 95 51.6
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.2e-11 73.2 105 45.7
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.2e-11 73.2 105 45.7
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 4.6e-11 71.2 107 45.8
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 6.1e-11 70.9 95 52.6
Carub.0006s1188 Capsella rubella HOM05D007429 ORTHO05D003505 1.0e-10 70.1 50 74.0
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 1.0e-10 70.1 101 46.5
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.0e-10 70.1 108 44.4
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.0e-10 70.1 106 46.2
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 2.3e-10 68.9 99 46.5
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 3.0e-10 68.6 109 45.9
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 3.9e-10 68.2 107 43.0
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 3.9e-10 68.2 100 44.0
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 5.1e-10 67.8 111 41.4
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 5.1e-10 67.8 109 41.3
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 5.1e-10 67.8 109 41.3
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 8.8e-10 67.0 99 46.5
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 8.8e-10 67.0 105 42.9
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 1.1e-09 66.6 109 40.4
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.1e-09 66.6 108 44.4
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 1.1e-09 66.6 102 45.1
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 1.1e-09 66.6 105 46.7
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 1.1e-09 66.6 105 41.9
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 1.5e-09 66.2 110 40.0
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 1.5e-09 66.2 110 40.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 2.0e-09 65.9 111 41.4
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.0e-09 65.9 109 40.4
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 2.0e-09 65.9 103 45.6
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.5e-09 65.5 107 43.0
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 3.3e-09 65.1 109 40.4
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 4.3e-09 64.7 100 43.0
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 4.3e-09 64.7 102 45.1
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 4.3e-09 64.7 106 47.2
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 4.3e-09 64.7 106 47.2
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 4.3e-09 64.7 106 47.2
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 4.3e-09 64.7 53 66.0
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 5.7e-09 64.3 100 49.0
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 9.7e-09 63.5 97 45.4
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 2.2e-08 62.4 100 42.0
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 2.2e-08 62.4 53 58.5
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.8e-08 62.0 100 48.0
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.8e-08 62.0 100 48.0
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 2.8e-08 62.0 108 43.5
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 4.8e-08 61.2 104 45.2
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 6.3e-08 60.8 108 43.5
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 1.1e-07 60.1 53 58.5
Glyma.03G118000 Glycine max HOM05D006762 ORTHO05D022366 1.1e-07 60.1 81 45.7
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 1.8e-07 59.3 93 47.3
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 4.1e-07 58.2 99 42.4
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 5.3e-07 57.8 88 45.5
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 9.1e-07 57.0 101 40.6
Lj3g0016504 Lotus japonicus HOM05D006762 ORTHO05D022366 9.1e-07 57.0 77 48.1
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 9.1e-07 57.0 95 48.4
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 9.1e-07 57.0 94 46.8
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 9.1e-07 57.0 109 41.3
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 1.2e-06 56.6 99 40.4
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.2e-06 56.6 92 46.7
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 1.2e-06 56.6 92 42.4
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.5e-06 56.2 47 63.8
Ca_23117_v3 Cicer arietinum L. HOM05D006762 ORTHO05D022366 1.5e-06 56.2 83 47.0
Phvul.010G056600 Phaseolus vulgaris HOM05D006762 ORTHO05D022366 1.5e-06 56.2 88 45.5
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 1.5e-06 56.2 85 47.1
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.0e-06 55.8 109 40.4
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 3.4e-06 55.1 95 42.1
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 3.4e-06 55.1 111 38.7
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 4.5e-06 54.7 89 44.9
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 4.5e-06 54.7 94 44.7
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 4.5e-06 54.7 102 42.2
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 5.9e-06 54.3 94 41.5
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 7.7e-06 53.9 102 43.1
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 7.7e-06 53.9 99 40.4
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 7.7e-06 53.9 87 44.8
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 7.7e-06 53.9 94 42.6
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 7.7e-06 53.9 106 37.7


User provided reference genes

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