Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 3.2e-136 488.4 248 100.0
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 5.1e-134 481.1 253 97.6
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 5.1e-134 481.1 253 97.6
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 1.4e-128 463.0 254 94.9
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 2.2e-124 449.1 254 91.3
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 2.8e-124 448.7 254 90.6
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 1.4e-123 446.4 280 85.0
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 1.4e-123 446.4 254 90.2
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 2.5e-120 435.6 254 87.8
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 2.7e-119 432.2 257 86.8
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 3.6e-119 431.8 258 86.4
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 3.9e-118 428.3 258 86.0
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 3.9e-118 428.3 258 86.0
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 1.5e-117 426.4 256 86.3
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 5.0e-113 411.4 252 82.1
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 5.2e-110 401.4 233 88.8
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 2.7e-106 389.0 254 82.7
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 2.7e-103 379.0 254 76.0
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 4.0e-94 348.6 190 92.6
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 1.9e-80 303.1 258 59.7
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 4.0e-78 295.4 258 58.5
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 1.7e-76 290.0 257 57.2
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 1.1e-75 287.3 259 56.8
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 1.2e-74 283.9 248 58.5
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 3.0e-73 279.3 259 55.6
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 8.6e-73 277.7 241 57.7
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 1.1e-72 277.3 258 55.8
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 1.9e-72 276.6 258 55.8
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 5.6e-72 275.0 259 55.6
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 9.5e-72 274.2 152 89.5
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 1.2e-71 273.9 256 55.1
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 2.1e-71 273.1 254 55.9
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 2.8e-71 272.7 253 56.5
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 2.8e-71 272.7 260 55.8
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 1.8e-70 270.0 257 53.7
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 5.8e-69 265.0 245 56.3
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 9.9e-69 264.2 258 51.9
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 1.3e-68 263.8 251 53.8
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 1.7e-68 263.5 259 54.1
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.4e-67 259.6 258 53.9
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 3.2e-67 259.2 260 55.0
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 4.1e-67 258.8 260 55.0
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 1.2e-66 257.3 249 54.2
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 1.2e-66 257.3 260 53.5
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 2.7e-66 256.1 252 53.6
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 4.6e-66 255.4 245 54.7
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 6.0e-66 255.0 259 52.9
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 7.8e-66 254.6 252 54.4
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 1.0e-65 254.2 244 53.3
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 1.0e-65 254.2 245 56.3
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 1.7e-65 253.4 240 56.2
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 1.7e-65 253.4 252 54.0
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 2.3e-65 253.1 250 52.8
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 3.0e-65 252.7 254 52.0
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 3.9e-65 252.3 212 57.5
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 6.6e-65 251.5 259 52.1
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 6.6e-65 251.5 250 53.2
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.1e-64 250.8 244 53.3
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 1.1e-64 250.8 246 54.1
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 1.9e-64 250.0 253 53.4
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.5e-64 249.6 259 52.5
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 2.5e-64 249.6 257 51.8
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 4.3e-64 248.8 252 52.4
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 5.6e-64 248.4 247 55.1
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 5.6e-64 248.4 292 46.6
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 9.5e-64 247.7 230 58.3
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 1.2e-63 247.3 245 53.1
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 1.2e-63 247.3 240 56.7
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 1.2e-63 247.3 247 51.4
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 1.6e-63 246.9 245 54.7
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 2.1e-63 246.5 250 53.2
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 3.6e-63 245.7 243 52.3
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 3.6e-63 245.7 239 54.8
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 8.1e-63 244.6 245 53.9
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 3.1e-62 242.7 248 51.6
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 6.8e-62 241.5 250 49.2
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 2.6e-61 239.6 212 58.5
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 2.6e-61 239.6 251 50.6
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 4.4e-61 238.8 245 51.0
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 9.9e-61 237.7 254 49.6
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 9.9e-61 237.7 230 53.0
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 9.9e-61 237.7 235 53.2
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 9.9e-61 237.7 235 53.2
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 5.4e-59 231.9 242 51.2
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 1.2e-58 230.7 246 50.4
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 1.6e-58 230.3 257 45.9
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 1.6e-58 230.3 256 46.9
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 2.7e-58 229.6 238 50.4
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 7.8e-58 228.0 211 55.5
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 1.7e-57 226.9 237 51.9
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 3.9e-57 225.7 243 52.7
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 5.1e-57 225.3 211 55.0
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 1.5e-56 223.8 229 52.4
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 9.6e-56 221.1 225 52.4
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 2.0e-53 213.4 248 47.6
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 1.0e-49 201.1 215 50.7
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 3.3e-48 196.1 224 51.3
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 7.3e-48 194.9 329 36.5
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 1.7e-44 183.7 170 54.7
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 4.2e-43 179.1 242 44.6
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 7.9e-42 174.9 173 50.3
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 8.4e-36 154.8 132 62.1
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 7.9e-34 148.3 245 40.0
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 1.5e-29 134.0 113 63.7
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 8.4e-28 128.3 136 49.3
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.0e-25 121.3 116 51.7
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.0e-25 121.3 116 51.7
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 7.7e-21 105.1 199 33.2
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 7.9e-18 95.1 128 45.3
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 6.7e-17 92.0 189 30.2
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 3.3e-16 89.7 95 48.4
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 8.2e-15 85.1 154 37.7
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.5e-13 80.9 88 50.0
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 7.2e-11 72.0 162 30.9
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 9.4e-11 71.6 62 51.6
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 7.9e-10 68.6 104 39.4
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 4.1e-06 56.2 76 42.1


User provided reference genes

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