Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 6.1e-43 177.9 162 100.0
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 6.1e-43 177.9 162 100.0
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 1.7e-37 159.8 158 97.5
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 3.1e-31 139.0 145 99.3
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 7.5e-25 117.9 145 87.6
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 7.5e-25 117.9 145 91.0
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 2.8e-24 115.9 145 89.0
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 6.3e-24 114.8 145 89.7
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 2.4e-23 112.8 145 81.4
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 1.6e-22 110.2 145 82.8
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 3.2e-20 102.4 145 79.3
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 2.8e-16 89.4 58 75.9
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 8.3e-16 87.8 68 63.2
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 1.8e-15 86.7 66 69.7
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.8e-15 86.7 81 58.0
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 3.1e-15 85.9 61 68.9
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 4.1e-15 85.5 73 65.8
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 7.0e-15 84.7 76 57.9
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 9.1e-15 84.3 61 62.3
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 9.1e-15 84.3 68 66.2
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 9.1e-15 84.3 56 73.2
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 1.2e-14 84.0 67 67.2
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 1.6e-14 83.6 56 73.2
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 1.6e-14 83.6 60 65.0
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 2.0e-14 83.2 62 67.7
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 2.0e-14 83.2 56 71.4
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.7e-14 82.8 68 63.2
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 4.5e-14 82.0 62 69.4
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 4.5e-14 82.0 56 71.4
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 5.9e-14 81.6 56 67.9
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 5.9e-14 81.6 65 67.7
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 5.9e-14 81.6 65 60.0
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.9e-14 81.6 65 60.0
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 5.9e-14 81.6 67 64.2
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 5.9e-14 81.6 63 63.5
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 7.7e-14 81.3 75 57.3
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 7.7e-14 81.3 67 64.2
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 1.0e-13 80.9 53 73.6
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 1.0e-13 80.9 66 63.6
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 1.0e-13 80.9 66 63.6
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 1.0e-13 80.9 70 61.4
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 1.0e-13 80.9 56 71.4
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 1.3e-13 80.5 65 58.5
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 1.3e-13 80.5 56 69.6
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 1.3e-13 80.5 56 69.6
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 1.7e-13 80.1 70 58.6
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 2.2e-13 79.7 63 65.1
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 2.2e-13 79.7 68 61.8
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 2.9e-13 79.3 65 64.6
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 2.9e-13 79.3 57 70.2
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 2.9e-13 79.3 62 61.3
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 3.8e-13 79.0 58 67.2
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 5.0e-13 78.6 56 69.6
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 5.0e-13 78.6 53 73.6
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 6.5e-13 78.2 54 68.5
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 1.5e-12 77.0 67 61.2
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 2.5e-12 76.3 53 66.0
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 3.2e-12 75.9 51 70.6
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 3.2e-12 75.9 56 66.1
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 3.2e-12 75.9 53 69.8
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 4.2e-12 75.5 80 53.8
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 4.2e-12 75.5 80 53.8
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 4.2e-12 75.5 59 64.4
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 5.5e-12 75.1 61 65.6
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 1.2e-11 73.9 54 66.7
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 1.2e-11 73.9 51 72.5
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 1.6e-11 73.6 67 61.2
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 1.6e-11 73.6 69 62.3
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 2.1e-11 73.2 61 62.3
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 2.1e-11 73.2 52 67.3
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 6.1e-11 71.6 55 63.6
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 8.0e-11 71.2 47 72.3
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 8.0e-11 71.2 78 53.8
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 8.0e-11 71.2 58 60.3
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 8.0e-11 71.2 48 68.8
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 1.4e-10 70.5 60 63.3
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 1.8e-10 70.1 48 66.7
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 1.8e-10 70.1 57 61.4
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 3.0e-10 69.3 55 58.2
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 3.0e-10 69.3 48 68.8
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 3.0e-10 69.3 48 64.6
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 4.0e-10 68.9 58 63.8
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 5.2e-10 68.6 62 58.1
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 6.8e-10 68.2 53 64.2
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 8.8e-10 67.8 50 70.0
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 1.5e-09 67.0 52 65.4
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 2.6e-09 66.2 58 62.1
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 2.6e-09 66.2 61 60.7
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 7.5e-09 64.7 41 75.6
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 2.8e-08 62.8 53 62.3
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 3.7e-08 62.4 65 55.4
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 1.1e-07 60.8 52 57.7
SMO164G0043 Selaginella moellendorffii HOM05D007144 ORTHO05D008709 1.1e-07 60.8 55 54.5
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 1.4e-07 60.5 44 68.2
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 1.8e-07 60.1 61 45.9
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 9.2e-07 57.8 48 62.5
CBR_g48945 Chara braunii HOM05D007144 ORTHO05D008709 2.7e-06 56.2 63 46.0
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 4.5e-06 55.5 43 65.1


User provided reference genes

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