Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 2.9e-233 811.6 431 100.0
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 2.9e-193 678.7 364 100.0
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 1.2e-175 620.2 367 92.6
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 4.8e-172 608.2 366 91.3
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 1.0e-158 563.9 366 81.7
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 9.8e-157 557.4 365 82.7
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 7.0e-155 551.2 388 78.9
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 6.1e-151 538.1 367 81.7
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 1.8e-150 536.6 366 80.9
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 2.6e-149 532.7 402 75.4
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 9.2e-147 524.2 353 79.6
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 1.3e-145 520.4 370 80.0
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 5.8e-141 505.0 379 75.2
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 3.3e-136 489.2 381 71.4
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 7.3e-136 488.0 417 67.9
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 1.6e-135 486.9 352 77.3
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 7.3e-120 434.9 364 66.8
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.2e-117 427.6 362 71.0
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 7.1e-115 418.3 386 62.2
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.2e-114 417.5 386 61.1
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 2.7e-114 416.4 373 61.9
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 1.0e-113 414.5 386 61.9
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 3.0e-113 412.9 386 61.4
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.1e-113 412.1 382 58.9
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 1.1e-112 411.0 380 60.0
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 3.1e-110 402.9 376 59.3
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 6.9e-110 401.7 387 59.2
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.5e-109 400.6 385 57.4
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 7.6e-109 398.3 385 57.7
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 2.4e-107 393.3 379 56.5
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 4.2e-107 392.5 386 58.8
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 1.6e-106 390.6 362 61.6
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 3.5e-106 389.4 390 57.9
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 4.6e-106 389.0 401 55.4
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 6.0e-106 388.7 401 57.1
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 1.0e-105 387.9 377 58.4
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 1.3e-105 387.5 368 60.1
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 2.3e-105 386.7 369 59.9
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 5.1e-105 385.6 380 56.3
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 5.6e-104 382.1 386 57.5
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 7.4e-104 381.7 382 58.1
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 7.4e-104 381.7 380 58.2
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 9.6e-104 381.3 432 53.2
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 2.1e-103 380.2 361 58.2
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 3.7e-103 379.4 370 60.3
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 4.8e-103 379.0 385 55.8
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 6.2e-103 378.6 371 58.5
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.8e-102 377.1 382 56.8
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 1.8e-102 377.1 396 55.6
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 9.0e-102 374.8 382 56.0
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 9.0e-102 374.8 372 57.5
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 2.6e-101 373.2 442 49.5
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 5.8e-101 372.1 366 56.8
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 1.0e-100 371.3 382 54.7
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 2.2e-100 370.2 454 50.7
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 3.8e-100 369.4 363 57.6
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 4.9e-100 369.0 391 51.7
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 6.5e-100 368.6 375 56.3
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 6.5e-100 368.6 374 56.1
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 6.5e-100 368.6 380 54.2
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 8.4e-100 368.2 383 54.8
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 1.4e-99 367.5 379 54.1
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 1.9e-99 367.1 429 51.7
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.5e-99 366.7 362 58.0
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 2.5e-99 366.7 384 56.2
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 2.5e-99 366.7 379 54.9
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 1.2e-98 364.4 382 55.2
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 1.2e-98 364.4 382 55.0
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 3.5e-98 362.8 353 58.6
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 4.6e-98 362.5 360 57.2
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 3.9e-97 359.4 369 57.2
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 1.1e-96 357.8 353 57.2
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 4.3e-96 355.9 413 51.3
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 7.4e-96 355.1 376 54.5
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 7.4e-96 355.1 381 53.0
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 9.6e-96 354.8 367 57.8
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 1.6e-95 354.0 363 55.9
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 1.6e-95 354.0 389 54.5
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 2.1e-95 353.6 377 56.0
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 2.8e-95 353.2 364 56.3
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 1.1e-94 351.3 363 55.6
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.4e-94 350.9 390 51.8
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 4.0e-94 349.4 381 53.5
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 1.2e-93 347.8 372 53.2
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 7.6e-93 345.1 388 51.0
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 7.6e-93 345.1 378 53.2
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 1.7e-92 344.0 385 52.2
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 1.9e-91 340.5 402 51.2
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 6.1e-90 335.5 360 53.9
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 1.0e-89 334.7 358 50.8
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 6.7e-89 332.0 362 55.0
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 1.5e-88 330.9 359 50.7
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 4.8e-87 325.9 360 50.8
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 8.2e-87 325.1 374 48.7
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 1.0e-84 318.2 359 51.3
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 2.9e-84 316.6 334 54.8
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 8.5e-84 315.1 445 44.7
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 1.1e-83 314.7 396 47.2
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 6.1e-82 308.9 369 51.8
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 2.3e-81 307.0 368 51.4
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 3.3e-80 303.1 322 54.3
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.7e-76 290.8 389 46.8
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 2.9e-76 290.0 316 52.8
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 5.0e-76 289.3 364 45.1
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.1e-70 271.6 164 76.8
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 5.2e-57 226.1 141 76.6
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 1.3e-52 211.5 135 71.1
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 3.4e-48 196.8 275 49.1
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 7.0e-46 189.1 356 34.8
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 2.0e-45 187.6 336 37.2
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.7e-44 184.5 360 33.6
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 2.5e-43 180.6 364 33.8
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 8.9e-41 172.2 369 32.8
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 1.3e-39 168.3 112 70.5
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 2.7e-37 160.6 84 91.7
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 3.0e-28 130.6 228 34.2
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 6.8e-25 119.4 93 63.4
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.2e-24 118.6 179 37.4
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 2.4e-22 110.9 214 33.2
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.6e-21 108.2 64 81.2
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 1.1e-19 102.1 59 84.7
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 4.0e-17 93.6 209 34.4
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 5.2e-17 93.2 171 34.5
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 9.9e-16 89.0 56 71.4
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 8.4e-15 85.9 59 71.2


User provided reference genes

Program Settings