Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 2.2e-111 405.6 196 100.0
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 4.8e-103 377.9 184 100.0
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 1.5e-99 366.3 184 96.7
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.9e-99 365.9 184 96.7
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 9.4e-99 363.6 186 95.2
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 6.1e-98 360.9 184 94.0
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 1.4e-97 359.8 184 93.5
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 1.8e-97 359.4 184 93.5
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 5.2e-97 357.8 184 92.9
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 6.8e-97 357.5 184 93.5
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 6.8e-97 357.5 184 93.5
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 6.8e-97 357.5 184 93.5
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 8.8e-97 357.1 184 92.9
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 1.2e-96 356.7 184 92.9
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 1.5e-96 356.3 184 92.9
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 2.0e-96 355.9 184 92.9
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 6.3e-95 350.9 184 90.8
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 2.7e-93 345.5 183 88.5
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 3.5e-93 345.1 183 89.1
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 1.3e-87 326.6 183 82.0
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 6.3e-87 324.3 183 80.9
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 8.3e-87 323.9 184 81.0
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 8.3e-87 323.9 180 82.2
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 8.3e-87 323.9 181 81.8
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 1.8e-86 322.8 181 82.3
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 3.1e-86 322.0 181 80.7
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 3.1e-86 322.0 181 80.7
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 4.1e-86 321.6 183 79.8
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 4.1e-86 321.6 181 81.2
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 5.4e-86 321.2 181 81.2
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 7.0e-86 320.9 180 81.7
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 7.0e-86 320.9 180 81.1
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 9.2e-86 320.5 180 81.1
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 9.2e-86 320.5 181 79.6
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 9.2e-86 320.5 181 81.2
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.2e-85 320.1 180 80.6
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.2e-85 320.1 181 81.2
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.2e-85 320.1 180 81.7
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.6e-85 319.7 181 80.7
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.6e-85 319.7 180 79.4
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 2.0e-85 319.3 181 81.2
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 4.5e-85 318.2 181 81.2
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 4.5e-85 318.2 181 80.1
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 5.9e-85 317.8 180 78.9
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 7.8e-85 317.4 183 78.7
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 7.8e-85 317.4 183 77.6
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 1.0e-84 317.0 180 80.6
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 1.3e-84 316.6 183 79.2
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 1.3e-84 316.6 183 79.8
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 1.3e-84 316.6 180 80.6
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.7e-84 316.2 182 78.6
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 2.9e-84 315.5 180 80.0
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 2.9e-84 315.5 180 79.4
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 3.8e-84 315.1 181 79.0
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 3.8e-84 315.1 182 78.6
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 3.8e-84 315.1 180 81.1
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 5.0e-84 314.7 183 78.7
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 5.0e-84 314.7 183 78.1
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 5.0e-84 314.7 181 79.6
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 6.6e-84 314.3 184 77.7
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 6.6e-84 314.3 180 79.4
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 8.6e-84 313.9 180 78.3
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 8.6e-84 313.9 181 79.6
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 8.6e-84 313.9 183 77.0
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 8.6e-84 313.9 180 79.4
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 8.6e-84 313.9 183 78.7
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 1.1e-83 313.5 181 79.6
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 1.1e-83 313.5 180 77.8
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 1.1e-83 313.5 180 78.3
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.1e-83 313.5 180 79.4
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.5e-83 313.2 183 79.8
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 1.9e-83 312.8 180 78.3
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.9e-83 312.8 180 77.8
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.9e-83 312.8 180 77.8
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.9e-83 312.8 183 77.6
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 2.5e-83 312.4 181 79.0
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 4.3e-83 311.6 180 79.4
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 5.6e-83 311.2 183 79.2
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 5.6e-83 311.2 181 78.5
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.3e-83 310.8 181 79.0
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.3e-83 310.8 180 80.0
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 7.3e-83 310.8 183 77.0
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 7.3e-83 310.8 183 76.0
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 9.5e-83 310.5 179 80.4
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 1.2e-82 310.1 180 78.3
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 1.2e-82 310.1 180 79.4
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.2e-82 310.1 172 84.9
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.6e-82 309.7 180 77.2
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 1.6e-82 309.7 181 78.5
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 2.8e-82 308.9 180 78.3
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 4.7e-82 308.1 180 77.2
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 4.7e-82 308.1 183 77.6
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 4.7e-82 308.1 180 76.7
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 8.0e-82 307.4 175 81.1
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.8e-81 306.2 180 78.3
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 4.0e-81 305.1 183 76.5
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 6.8e-81 304.3 180 78.9
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 8.9e-81 303.9 180 75.6
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 2.0e-80 302.8 180 76.7
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 3.4e-80 302.0 181 74.0
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 3.4e-80 302.0 189 73.5
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 9.8e-80 300.4 181 75.7
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 8.3e-79 297.4 189 72.5
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 9.2e-78 293.9 181 73.5
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 2.0e-77 292.7 180 71.7
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 7.8e-77 290.8 184 75.0
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 1.3e-76 290.0 181 72.9
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 1.9e-75 286.2 181 72.4
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 4.3e-75 285.0 181 71.8
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 2.1e-74 282.7 183 69.4
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 3.6e-74 282.0 182 70.3
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 6.8e-73 277.7 181 70.2
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 6.8e-73 277.7 181 69.6
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 8.9e-73 277.3 181 69.1
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 1.5e-72 276.6 181 68.5
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 1.5e-72 276.6 181 70.2
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.3e-71 273.5 173 71.7
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 4.9e-71 271.6 183 67.2
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 2.3e-68 262.7 180 66.7
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 8.6e-68 260.8 183 63.4
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.8e-65 253.1 184 59.2
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 5.2e-57 224.9 181 54.7
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 6.4e-55 218.0 190 52.1
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.1e-54 217.2 186 53.2
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.6e-53 213.4 185 52.4
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 8.7e-52 207.6 172 59.9
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 5.6e-51 204.9 175 51.4
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 1.4e-46 190.3 151 56.3
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 2.1e-42 176.4 177 50.8
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 4.8e-34 148.7 89 77.5
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 3.8e-31 139.0 172 44.8
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 2.4e-25 119.8 87 64.4
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 2.6e-24 116.3 158 36.7
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 1.9e-19 100.1 63 74.6
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 8.5e-07 58.2 88 34.1


User provided reference genes

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