Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 2.8e-81 305.1 136 100.0
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 2.8e-81 305.1 136 100.0
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.5e-79 299.3 136 97.8
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 7.0e-77 290.4 136 96.3
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 3.1e-72 275.0 136 91.2
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 5.2e-72 274.2 136 91.2
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 5.2e-72 274.2 136 91.2
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 6.8e-72 273.9 136 90.4
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 1.5e-71 272.7 136 89.7
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 2.6e-71 271.9 136 89.7
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 4.4e-71 271.2 136 90.4
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 4.4e-71 271.2 136 90.4
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 4.4e-71 271.2 136 89.7
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 1.1e-69 266.5 136 89.0
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 6.6e-67 257.3 143 83.2
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 8.6e-67 256.9 136 86.0
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 2.8e-65 251.9 136 83.1
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 3.8e-62 241.5 136 77.2
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.1e-61 240.0 136 77.9
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 2.4e-61 238.8 136 76.5
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.2e-61 238.4 136 76.5
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 9.2e-61 236.9 136 75.7
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 1.2e-60 236.5 136 76.5
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 1.2e-60 236.5 136 75.7
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.6e-60 236.1 136 76.5
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 6.0e-60 234.2 136 75.7
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.7e-59 232.6 136 75.0
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.1e-58 229.9 128 78.1
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.5e-58 229.6 135 74.1
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.5e-58 229.6 136 75.0
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.5e-58 228.8 136 73.5
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 3.3e-58 228.4 136 73.5
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 5.6e-58 227.6 148 69.6
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.6e-58 227.6 136 72.8
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.6e-58 227.6 136 72.8
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 9.6e-58 226.9 136 72.8
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.6e-57 226.1 136 72.8
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 2.1e-57 225.7 136 73.5
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.8e-57 225.3 149 69.1
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 4.7e-57 224.6 154 68.2
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 8.1e-57 223.8 134 71.6
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.4e-56 223.0 148 68.9
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.4e-56 223.0 136 72.8
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.8e-56 222.6 136 72.8
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.8e-56 222.6 154 68.2
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 2.4e-56 222.2 154 68.2
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.4e-56 222.2 151 65.6
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 3.1e-56 221.9 136 72.8
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.0e-56 221.5 138 73.2
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.0e-56 221.5 138 73.2
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.2e-56 221.1 138 73.2
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 9.0e-56 220.3 136 70.6
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.5e-55 219.5 131 73.3
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.5e-55 219.5 136 72.1
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 1.5e-55 219.5 151 67.5
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 2.0e-55 219.2 149 66.4
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 2.6e-55 218.8 146 65.1
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 3.4e-55 218.4 143 67.8
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 5.8e-55 217.6 143 67.1
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 7.6e-55 217.2 149 65.8
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 9.9e-55 216.9 131 72.5
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 9.9e-55 216.9 124 74.2
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.3e-54 216.5 134 70.9
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 1.7e-54 216.1 145 66.9
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.2e-54 215.7 160 62.5
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 2.9e-54 215.3 160 58.1
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 2.9e-54 215.3 132 72.0
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.9e-54 215.3 153 63.4
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 2.9e-54 215.3 131 71.0
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 3.8e-54 214.9 124 77.4
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 6.4e-54 214.2 124 75.0
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.1e-53 213.4 134 72.4
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 1.4e-53 213.0 136 69.9
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.4e-53 213.0 150 64.0
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.9e-53 212.6 150 62.0
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.4e-53 212.2 154 62.3
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 3.2e-53 211.8 150 64.0
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 3.2e-53 211.8 134 69.4
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.4e-53 211.1 134 71.6
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 7.1e-53 210.7 123 73.2
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 7.1e-53 210.7 158 60.8
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 9.3e-53 210.3 134 71.6
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 2.1e-52 209.1 133 69.2
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 7.8e-52 207.2 145 65.5
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 7.8e-52 207.2 136 68.4
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.8e-52 207.2 154 60.4
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.3e-51 206.5 145 62.1
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 3.0e-51 205.3 133 69.2
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.9e-51 204.9 145 61.4
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 3.9e-51 204.9 150 61.3
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 5.1e-51 204.5 134 67.9
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 6.6e-51 204.1 123 70.7
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 8.7e-51 203.8 136 64.0
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 8.7e-51 203.8 136 64.0
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.5e-50 203.0 160 56.9
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.5e-50 202.2 146 62.3
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 5.6e-50 201.1 138 63.0
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 2.1e-49 199.1 139 63.3
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 2.8e-49 198.7 133 67.7
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 4.0e-48 194.9 134 66.4
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 9.0e-48 193.7 151 58.3
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 3.4e-47 191.8 147 59.9
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 7.6e-47 190.7 136 66.2
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 3.8e-46 188.3 131 67.2
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 9.3e-45 183.7 131 64.1
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.2e-44 183.3 114 68.4
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.2e-44 183.3 114 68.4
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 2.7e-44 182.2 156 55.1
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 7.9e-44 180.6 160 55.6
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 5.6e-42 174.5 108 70.4
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 2.8e-41 172.2 174 48.9
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 3.1e-40 168.7 123 59.3
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 4.9e-38 161.4 137 55.5
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 4.6e-36 154.8 118 55.9
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 1.5e-34 149.8 125 56.0
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.3e-33 146.7 137 48.9
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 2.6e-31 139.0 144 45.8
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 8.7e-27 124.0 84 63.1
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 9.7e-26 120.6 73 71.2
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 2.2e-22 109.4 60 80.0
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 8.5e-22 107.5 58 77.6
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 3.1e-16 89.0 106 45.3
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.1e-16 88.6 57 64.9
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.6e-15 85.9 110 41.8
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 4.5e-15 85.1 136 40.4
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.3e-14 83.6 74 52.7
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.3e-14 83.6 81 46.9
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.1e-13 80.5 80 46.2
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 1.9e-13 79.7 80 45.0
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 2.1e-12 76.3 96 40.6
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 5.1e-11 71.6 103 36.9
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.1e-10 70.5 44 63.6
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 1.5e-10 70.1 107 36.4
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 1.7e-09 66.6 40 67.5
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 6.3e-09 64.7 49 57.1
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 5.3e-08 61.6 53 52.8
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 9.1e-08 60.8 52 53.8
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 9.1e-08 60.8 52 53.8
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.2e-07 60.5 57 49.1
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 2.2e-06 56.2 52 51.9
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 8.5e-06 54.3 48 54.2


User provided reference genes

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