Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 9.0e-74 280.4 168 100.0
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 4.5e-73 278.1 168 88.7
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 1.1e-66 256.9 166 83.7
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 1.5e-65 253.1 168 83.3
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 2.8e-59 232.3 169 78.1
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 1.1e-47 193.7 169 68.6
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 4.2e-47 191.8 169 68.0
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 1.6e-46 189.9 169 68.0
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 1.6e-46 189.9 169 68.0
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 7.9e-46 187.6 169 66.9
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 5.1e-45 184.9 169 68.0
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 6.7e-45 184.5 172 69.2
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 8.8e-45 184.1 168 66.1
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 2.6e-44 182.6 168 63.7
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 2.5e-39 166.0 145 65.5
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 2.0e-36 156.4 177 55.9
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 2.2e-32 142.9 171 53.2
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 6.3e-27 124.8 169 48.5
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 8.3e-27 124.4 106 65.1
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 2.0e-25 119.8 115 59.1
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 2.0e-25 119.8 102 66.7
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 2.7e-25 119.4 161 46.0
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 2.7e-25 119.4 163 47.2
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 3.5e-25 119.0 95 66.3
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 4.5e-25 118.6 108 63.0
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 1.0e-24 117.5 116 59.5
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 1.3e-24 117.1 115 60.0
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 1.3e-24 117.1 166 47.6
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 1.7e-24 116.7 162 48.8
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 2.9e-24 115.9 110 61.8
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 3.8e-24 115.5 163 46.6
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 3.8e-24 115.5 163 46.6
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 5.0e-24 115.2 108 63.0
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 5.0e-24 115.2 97 64.9
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 6.5e-24 114.8 108 62.0
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 8.5e-24 114.4 109 58.7
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.1e-23 114.0 172 45.3
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 1.1e-23 114.0 115 56.5
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 2.5e-23 112.8 175 46.9
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 1.2e-22 110.5 171 43.9
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 1.6e-22 110.2 102 58.8
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 1.6e-22 110.2 119 56.3
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 2.1e-22 109.8 94 62.8
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 2.7e-22 109.4 100 62.0
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 2.7e-22 109.4 117 54.7
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 3.6e-22 109.0 94 60.6
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 4.7e-22 108.6 173 42.8
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 6.1e-22 108.2 179 44.1
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 8.0e-22 107.8 117 53.0
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 1.0e-21 107.5 168 48.8
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 1.4e-21 107.1 106 58.5
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 2.3e-21 106.3 105 58.1
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 5.2e-21 105.1 106 58.5
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 8.8e-21 104.4 103 59.2
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 1.2e-20 104.0 106 55.7
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.5e-20 103.6 102 58.8
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 2.0e-20 103.2 108 57.4
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 2.6e-20 102.8 104 57.7
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 2.6e-20 102.8 166 43.4
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 2.6e-20 102.8 108 57.4
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 3.4e-20 102.4 104 57.7
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 4.4e-20 102.1 104 57.7
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 5.7e-20 101.7 105 58.1
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 5.7e-20 101.7 116 51.7
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 7.5e-20 101.3 163 44.8
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 9.8e-20 100.9 114 50.9
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 9.8e-20 100.9 173 43.4
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 1.7e-19 100.1 104 55.8
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 2.8e-19 99.4 112 51.8
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 3.7e-19 99.0 102 56.9
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 4.9e-19 98.6 98 58.2
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 6.3e-19 98.2 170 39.4
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 6.3e-19 98.2 126 48.4
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 6.3e-19 98.2 120 50.8
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 8.3e-19 97.8 108 54.6
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 1.1e-18 97.4 102 56.9
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 1.4e-18 97.1 102 57.8
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 1.8e-18 96.7 117 53.8
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 2.4e-18 96.3 107 52.3
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 3.1e-18 95.9 126 46.0
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 4.1e-18 95.5 151 44.4
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 4.1e-18 95.5 103 54.4
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 5.4e-18 95.1 106 50.9
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 7.7e-17 91.3 82 63.4
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 2.3e-16 89.7 86 59.3
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 5.0e-16 88.6 97 51.5
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 1.1e-15 87.4 97 50.5
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 1.1e-15 87.4 100 53.0
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.1e-15 87.4 101 51.5
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 5.6e-15 85.1 133 44.4
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 5.6e-15 85.1 81 60.5
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 7.3e-15 84.7 165 38.8
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 7.3e-15 84.7 97 54.6
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 9.5e-15 84.3 158 38.0
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 1.2e-14 84.0 81 60.5
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 6.1e-14 81.6 78 60.3
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 6.1e-14 81.6 107 47.7
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 1.0e-13 80.9 67 62.7
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 1.4e-13 80.5 111 44.1
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 3.0e-13 79.3 116 42.2
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 4.0e-13 79.0 91 48.4
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 7.5e-12 74.7 78 53.8
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 7.5e-12 74.7 83 55.4
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 7.5e-12 74.7 98 51.0
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 1.7e-11 73.6 96 45.8
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 6.4e-11 71.6 113 34.5
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 1.1e-10 70.9 98 49.0
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 1.1e-10 70.9 98 46.9
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 9.2e-10 67.8 82 53.7
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 1.0e-08 64.3 95 45.3
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 3.9e-08 62.4 73 52.1
Zm00001eb141670 Zea mays HOM05D007065 ORTHO05D008960 9.5e-07 57.8 69 52.2


User provided reference genes

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