Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 0.0e+00 2129.0 1093 100.0
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 0.0e+00 1981.1 1120 93.0
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 0.0e+00 1979.9 1087 95.2
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 0.0e+00 1867.8 1107 89.3
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 0.0e+00 1841.6 1112 88.5
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 0.0e+00 1090.5 1150 61.0
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 0.0e+00 1077.8 1182 59.9
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 3.8e-298 1028.5 1232 56.3
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 1.1e-294 1016.9 1174 56.5
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 1.0e-282 977.2 1239 54.1
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 6.5e-282 974.5 1140 58.4
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 3.3e-278 962.2 1150 57.6
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 7.7e-275 951.0 1140 57.5
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 1.1e-268 930.6 1254 52.1
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 1.8e-268 929.9 1138 56.5
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 6.6e-258 894.8 1151 54.7
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 6.2e-240 835.1 1179 51.8
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.5e-148 530.8 1364 36.0
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.4e-127 461.1 1161 35.7
BcaNung06336 Brassica carinata HOM05D010678 ORTHO05D006673 4.0e-98 364.0 488 52.3
BcaC04g19101 Brassica carinata HOM05D010678 ORTHO05D006673 1.4e-45 189.5 101 92.1
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 5.2e-37 161.0 1124 26.4
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 4.5e-33 147.9 1183 25.8
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 7.7e-33 147.1 1349 25.2
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 7.7e-33 147.1 1337 25.2
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 2.9e-32 145.2 1310 25.6
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 5.5e-31 141.0 1135 26.5
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 2.3e-29 135.6 1253 25.1
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 4.0e-29 134.8 1115 27.0
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 1.0e-24 120.2 1233 25.1
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 2.5e-23 115.5 1037 25.7
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 3.3e-23 115.2 1174 24.7
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 7.3e-23 114.0 540 31.7
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.1e-22 112.5 540 31.3
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 6.1e-22 110.9 564 30.1
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 8.0e-22 110.5 630 28.6
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 6.8e-21 107.5 1279 24.1
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 1.7e-19 102.8 292 37.0
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 1.7e-19 102.8 723 27.5
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 1.4e-18 99.8 1301 25.0
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 2.7e-17 95.5 570 29.5
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 6.6e-16 90.9 520 29.2
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.5e-15 89.7 1084 24.7
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.5e-15 89.7 383 30.5
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 2.5e-15 89.0 1090 25.3
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 3.3e-15 88.6 447 29.3
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 5.6e-15 87.8 392 29.1
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 5.6e-15 87.8 402 31.1
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 3.6e-14 85.1 532 28.9
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 4.7e-14 84.7 971 25.1
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 6.2e-14 84.3 372 31.2
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 6.2e-14 84.3 624 27.7
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.8e-13 82.8 1342 24.4
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 2.3e-13 82.4 1188 24.0
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 5.2e-13 81.3 532 28.8
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 6.8e-13 80.9 281 32.7
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.2e-12 80.1 1099 24.9
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 1.5e-12 79.7 442 27.4
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 2.6e-12 79.0 514 28.6
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 2.6e-12 79.0 500 29.4
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 3.4e-12 78.6 1107 26.2
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 5.8e-12 77.8 501 30.1
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.8e-12 77.0 302 33.1
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 2.2e-11 75.9 1100 25.1
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.2e-11 75.9 1297 24.1
BcaNung01900 Brassica carinata HOM05D010678 ORTHO05D006673 1.1e-10 73.6 54 66.7
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.1e-10 73.6 558 27.6
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 1.1e-10 73.6 536 28.0
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 1.4e-10 73.2 627 23.4
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.9e-10 72.8 1100 25.2
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 1.9e-10 72.8 1186 23.6
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 1.9e-10 72.8 473 29.4
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 7.0e-10 70.9 486 28.0
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 4.6e-09 68.2 243 29.6
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 3.9e-08 65.1 656 25.8
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 6.6e-08 64.3 1135 22.7
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 3.3e-07 62.0 1274 22.5
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 7.3e-07 60.8 646 25.7
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 9.5e-07 60.5 496 26.8
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.2e-06 60.1 446 27.1
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 4.7e-06 58.2 642 24.1
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 4.7e-06 58.2 526 27.8


User provided reference genes

Program Settings