Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 7.7e-87 323.9 181 100.0
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 7.7e-87 323.9 181 100.0
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 7.7e-87 323.9 181 100.0
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-84 315.1 181 97.8
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 7.4e-82 307.4 181 89.0
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-80 303.5 179 93.9
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.1e-72 276.9 183 85.8
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.2e-69 265.0 188 85.1
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 4.8e-65 251.5 181 77.3
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-63 246.9 179 77.1
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.2e-63 246.9 179 77.1
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-63 246.5 180 74.4
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.6e-63 246.5 180 74.4
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 3.8e-62 241.9 179 82.1
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.6e-60 236.5 190 77.9
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 7.5e-58 227.6 181 72.4
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.1e-52 209.5 185 71.9
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 2.7e-31 139.4 200 46.0
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.6e-31 138.7 204 52.5
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-30 136.7 200 53.5
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-30 136.7 200 52.5
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.3e-30 136.3 189 48.7
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-30 136.0 185 44.3
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.5e-29 133.7 184 46.2
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.9e-29 133.3 185 46.5
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 3.3e-29 132.5 185 43.8
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 4.3e-29 132.1 208 48.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.6e-28 130.2 200 44.0
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-28 129.8 185 43.2
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.1e-28 129.8 207 45.9
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.8e-28 129.4 200 43.5
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 4.7e-28 128.6 188 42.6
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 4.7e-28 128.6 195 42.1
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 8.0e-28 127.9 189 47.1
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.1e-27 127.5 188 41.5
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.4e-27 127.1 201 41.8
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 8.9e-27 124.4 193 43.5
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 2.0e-26 123.2 196 41.8
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 2.0e-26 123.2 194 40.7
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.4e-26 122.5 188 41.0
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.4e-26 122.5 188 41.5
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 3.4e-26 122.5 199 39.7
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 5.8e-26 121.7 185 42.7
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 7.5e-26 121.3 188 39.4
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 7.5e-26 121.3 184 42.4
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 7.5e-26 121.3 208 39.9
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 9.8e-26 120.9 190 38.9
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 9.8e-26 120.9 190 42.6
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 9.8e-26 120.9 187 42.2
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-25 120.6 190 38.4
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.3e-25 120.6 186 41.9
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.7e-25 120.2 187 41.2
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.7e-25 120.2 191 39.8
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.7e-25 120.2 189 41.3
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.2e-25 119.8 189 39.7
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.2e-25 119.8 184 40.2
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.9e-25 119.4 195 40.5
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 3.7e-25 119.0 192 39.1
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 4.9e-25 118.6 190 37.9
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 4.9e-25 118.6 190 37.9
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 4.9e-25 118.6 190 37.9
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 4.9e-25 118.6 203 42.4
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 4.9e-25 118.6 184 42.9
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.4e-25 118.2 191 38.7
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 8.3e-25 117.9 220 38.6
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.1e-24 117.5 211 47.4
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-24 117.1 185 42.2
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.4e-24 117.1 190 41.1
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.9e-24 116.7 194 38.7
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.4e-24 116.3 203 36.9
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 2.4e-24 116.3 198 42.9
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 2.4e-24 116.3 189 41.8
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 4.1e-24 115.5 187 40.1
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 7.0e-24 114.8 182 40.1
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 7.0e-24 114.8 192 39.1
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 9.2e-24 114.4 187 39.6
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.2e-23 114.0 192 44.3
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.6e-23 113.6 196 39.8
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.1e-23 113.2 188 37.8
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.7e-23 112.8 187 39.6
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 4.6e-23 112.1 196 36.7
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 4.6e-23 112.1 195 39.0
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.0e-23 111.7 195 39.0
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 6.0e-23 111.7 188 42.6
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 7.8e-23 111.3 203 39.9
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.0e-22 110.9 188 43.1
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.0e-22 110.9 170 43.5
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.0e-22 110.9 182 40.1
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.3e-22 110.5 192 38.5
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.3e-22 110.5 171 42.7
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.7e-22 110.2 192 37.5
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.3e-22 109.8 196 35.7
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 2.3e-22 109.8 203 44.3
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 3.0e-22 109.4 188 36.7
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 6.6e-22 108.2 198 36.4
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 6.6e-22 108.2 189 37.0
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 8.6e-22 107.8 204 44.6
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.1e-21 107.5 182 36.8
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-21 107.5 193 40.4
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.5e-21 107.1 186 38.7
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.5e-21 107.1 186 41.9
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.9e-21 106.7 224 36.6
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.9e-21 106.7 200 39.0
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.5e-21 106.3 186 38.2
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 3.3e-21 105.9 180 43.9
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 4.3e-21 105.5 176 45.5
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.3e-21 104.8 186 39.8
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.6e-20 103.6 196 40.3
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 4.7e-20 102.1 186 38.7
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 6.2e-20 101.7 197 43.7
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 8.1e-20 101.3 197 41.6
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.1e-19 100.9 186 35.5
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 2.3e-19 99.8 180 37.2
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.3e-19 99.8 228 33.3
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 4.0e-19 99.0 190 38.4
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 5.2e-19 98.6 165 38.8
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 8.9e-19 97.8 185 42.2
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.5e-18 97.1 185 44.3
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.5e-18 97.1 189 34.4
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.0e-18 96.7 191 34.6
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 5.8e-18 95.1 193 32.6
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 7.5e-18 94.7 188 35.6
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.7e-17 93.6 192 32.8
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.2e-17 93.2 180 36.1
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.2e-17 93.2 189 33.3
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.9e-17 92.8 186 38.2
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.9e-17 92.8 186 38.2
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.7e-17 92.4 168 45.2
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 4.9e-17 92.0 234 36.3
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 4.9e-17 92.0 177 39.0
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 4.9e-17 92.0 194 34.0
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 6.4e-17 91.7 165 37.0
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 8.3e-17 91.3 181 34.8
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.3e-17 91.3 186 37.6
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.3e-17 91.3 186 41.4
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.3e-17 91.3 187 41.2
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 8.3e-17 91.3 187 41.2
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.4e-16 89.7 178 39.9
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 3.2e-16 89.4 191 35.1
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 4.1e-16 89.0 165 36.4
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.1e-16 89.0 179 34.6
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 7.1e-16 88.2 191 42.9
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.1e-15 86.7 187 34.8
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.7e-15 86.3 71 64.8
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 3.5e-15 85.9 224 32.1
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 3.5e-15 85.9 101 46.5
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 4.6e-15 85.5 214 32.2
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 6.0e-15 85.1 202 32.7
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.9e-14 82.4 185 34.1
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 5.1e-14 82.0 208 31.7
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 6.6e-14 81.6 72 61.1
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 6.6e-14 81.6 165 35.8
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.5e-13 80.5 161 36.0
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.5e-13 79.7 165 35.8
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 7.3e-13 78.2 66 60.6
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 7.3e-13 78.2 153 36.6
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.6e-12 75.9 65 58.5
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 8.1e-12 74.7 147 36.7
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 3.1e-11 72.8 183 35.5
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.1e-11 72.8 181 30.9
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 4.0e-11 72.4 74 54.1
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 5.2e-11 72.0 186 30.1
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 5.2e-11 72.0 80 47.5
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.8e-11 71.6 177 29.9
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 4.4e-10 68.9 151 41.7
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 5.8e-10 68.6 76 48.7
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 7.6e-10 68.2 195 33.3
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 4.9e-09 65.5 178 32.6
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 1.1e-08 64.3 182 31.3
Oeu062519.1 Olea europaea HOM05D051843 ORTHO05D004573 1.3e-06 57.4 168 36.3
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.9e-06 55.8 89 38.2
Migut.F00001 Erythranthe guttata HOM05D004039 ORTHO05D189308 5.1e-06 55.5 156 39.1
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 8.7e-06 54.7 148 32.4


User provided reference genes

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